WormBase Tree Display for Gene: WBGene00015554

WBGene00015554 SMap: S_parent: Sequence: C06G3
  Identity: Version: 1
    Name: Sequence_name: C06G3.8
      Molecular_name: C06G3.8a
        C06G3.8a.1
        CE07984
        C06G3.8b
        CE49416
        C06G3.8b.1
      Other_name: CELE_C06G3.8 Accession_evidence: NDB BX284604
      Public_name: C06G3.8
    DB_info: Database: AceView gene 4H796
        WormQTL gene WBGene00015554
        WormFlux gene WBGene00015554
        NDB locus_tag CELE_C06G3.8
        Panther gene CAEEL|WormBase=WBGene00015554|UniProtKB=Q17749
          family PTHR13356
        NCBI gene 177470
        RefSeq protein NM_001380301.1
            NM_068688.8
        TrEMBL UniProtAcc V6CLM8
            Q17749
        UniProt_GCRP UniProtAcc Q17749
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (15)
    RNASeq_FPKM (74)
    GO_annotation: 00059060
      00059061
      00059062
      00059063
      00059064
    Contained_in_operon: CEOP4208
    Ortholog (34)
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and response to ionizing radiation. Predicted to be part of SOSS complex. Is an ortholog of human NABP1 (nucleic acid binding protein 1) and NABP2 (nucleic acid binding protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C06G3.8a
      C06G3.8b
    Corresponding_transcript: C06G3.8a.1
      C06G3.8b.1
    Other_sequence: CRC06277_1
      CR02964
    Associated_feature (2)
  Experimental_info: RNAi_result: WBRNAi00028596 Inferred_automatically: RNAi_primary
      WBRNAi00010343 Inferred_automatically: RNAi_primary
      WBRNAi00039940 Inferred_automatically: RNAi_primary
      WBRNAi00007926 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027541
      Expr1036662
      Expr1144014
      Expr2000545
      Expr2018771
    Drives_construct: WBCnstr00028755
    Construct_product: WBCnstr00028755
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050193:cec-4(ok3124)_downregulated_L1
      WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056284:INTS-6_interacting_protein
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061527:cyn-10_19153-K12H4.2
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00025032:cluster_6
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_F
      WBPaper00037147:heatshock_upregulated
      WBPaper00037611:RNP-8-associated
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_9
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc6390]:oogenesis-enriched
    Interaction (51)
  Map_info: Positive: Positive_clone: C06G3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 3.27792
  Reference: WBPaper00032961
    WBPaper00038491
    WBPaper00055090
  Method: Gene