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WormBase Tree Display for Gene: WBGene00015422

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Name Class

WBGene00015422SMapS_parentSequenceC04E6
IdentityVersion1
NameSequence_nameC04E6.5
Molecular_nameC04E6.5
C04E6.5.1
CE27053
Other_nameCELE_C04E6.5Accession_evidenceNDBBX284605
Public_nameC04E6.5
DB_infoDatabaseAceViewgene5G383
WormQTLgeneWBGene00015422
WormFluxgeneWBGene00015422
NDBlocus_tagCELE_C04E6.5
PanthergeneCAEEL|WormBase=WBGene00015422|UniProtKB=O01467
familyPTHR21646
NCBIgene178977
RefSeqproteinNM_072136.4
TREEFAMTREEFAM_IDTF323032
TrEMBLUniProtAccO01467
UniProt_GCRPUniProtAccO01467
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (46)
StrainWBStrain00036238
RNASeq_FPKM (74)
GO_annotation00121346
00121347
Ortholog (24)
Paralog (19)
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC04E6.5
Corresponding_transcriptC04E6.5.1
Associated_featureWBsf1000119
Experimental_infoRNAi_resultWBRNAi00094697Inferred_automaticallyRNAi_primary
WBRNAi00039610Inferred_automaticallyRNAi_primary
WBRNAi00028430Inferred_automaticallyRNAi_primary
WBRNAi00076075Inferred_automaticallyRNAi_primary
WBRNAi00010122Inferred_automaticallyRNAi_primary
WBRNAi00039609Inferred_automaticallyRNAi_primary
Expr_patternExpr1012306
Expr1143710
Expr2018626
Drives_constructWBCnstr00028859
Construct_productWBCnstr00028859
Microarray_results (16)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00033070:Elbe_downregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00041071:spe-44_downregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:rising_dev_expression
WBPaper00044760:germline_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045050:csr-1(hypomorph)_upregulated
WBPaper00045050:drh-3 (ne4253)_upregulated
WBPaper00045316:prg-1_downregulated_L4
WBPaper00045390:tunicamycin_upregulated
WBPaper00045521:Spermatogenic
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049489:AMsh-glia_enriched
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050231:male_enriched
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053599:female_vs_male_downregulated
WBPaper00054410:set-9(rw5)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055013:hmg-3(bar24)_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055648:sperm_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059426:SiO2-nanoparticles_upregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059598:HeatShock_downregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061341:28C_24h_downregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:prg-1(tm872)_upregulated
WBPaper00061527:Y40H4A.2-ZK1053.2
WBPaper00061853:osm-3(dh441)_downregulated
WBPaper00061853:osm-3(dh441)_downregulated_tunicamycin
WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_upregulated_CB4856_transcript
WBPaper00062456:doxycycline_upregulated_N2_transcript
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064502:spe-44(fx110)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065841:22_0
WBPaper00065841:120_0
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066038:mip-1(how5)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_E
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00037113:Diazinon_16C_regulated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00050650:mBmkTX_downregulated
[cgc6390]:Cluster_D
[cgc6390]:spermatogenesis-enriched
Interaction (17)
Map_infoPositivePositive_cloneC04E6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-0.778294
ReferenceWBPaper00030965
MethodGene