WormBase Tree Display for Gene: WBGene00012597

WBGene00012597 SMap: S_parent: Sequence: Y38E10A
  Identity: Version: 2
    Name: CGC_name: nhr-235 Person_evidence: WBPerson600
      Sequence_name: Y38E10A.19
      Molecular_name: Y38E10A.19
        Y38E10A.19.1
        CE21599
      Other_name: CELE_Y38E10A.19 Accession_evidence: NDB BX284602
      Public_name: nhr-235
    DB_info: Database: AceView gene 2M933
        WormQTL gene WBGene00012597
        WormFlux gene WBGene00012597
        NDB locus_tag CELE_Y38E10A.19
        Panther gene CAEEL|WormBase=WBGene00012597|UniProtKB=Q9NAJ2
          family PTHR46397
        NCBI gene 189664
        RefSeq protein NM_064301.2
        TREEFAM TREEFAM_ID TF321941
        TrEMBL UniProtAcc Q9NAJ2
        UniProt_GCRP UniProtAcc Q9NAJ2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-235
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (61)
    Strain: WBStrain00037250
    RNASeq_FPKM (74)
    GO_annotation: 00096125
    Ortholog: WBGene00059601 Caenorhabditis remanei From_analysis: TreeFam
      Csp11.Scaffold590.g5102 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      chrII_pilon.g6233 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (33)
    Structured_description: Automated_description: Predicted to be located in nucleus. Expressed in neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38E10A.19
    Corresponding_transcript: Y38E10A.19.1
    Associated_feature: WBsf990157
      WBsf990158
      WBsf1013467
      WBsf1013468
  Experimental_info: RNAi_result: WBRNAi00056018 Inferred_automatically: RNAi_primary
      WBRNAi00036844 Inferred_automatically: RNAi_primary
    Expr_pattern (3)
    Drives_construct: WBCnstr00012984
      WBCnstr00029889
    Construct_product: WBCnstr00029889
    Microarray_results (18)
    Expression_cluster: WBPaper00037624:ets-4(ok165)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00040560:hpl-2_L3_downregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050096:P.aeruginosa_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00051404:alg-5(ram2)_upregulated
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055226:adr-1(tm668)_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00059117:B.subtilis_downregulated
      WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060273:isp-1(qm150)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060921:cat-2(e1112)_upregulated
      WBPaper00060921:tdc-1(n3419)_upregulated
      WBPaper00060921:tph-1(mg280)_upregulated
      WBPaper00061081:E.faecalis_downregulated_N2
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:172183_at-176110_at
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064532:pals-22(jy3)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064602:egl-9(sa307)_downregulated
      WBPaper00064632:daf-2(e1370)_downregulated_intestine
      WBPaper00065029:cadmium_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065288:mdt-15(tm2182)_downregulated
      WBPaper00065841:0_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00038172:aak-2overexpression_down_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:N2_allantoin_upregulated
      WBPaper00053236:Starvation_regulated_N2
    Interaction: WBInteraction000547207
  Map_info: Map: II Position: 10.6451 Error: 0.014372
    Positive: Positive_clone: Y38E10A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00062515
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene