WormBase Tree Display for Gene: WBGene00011174

WBGene00011174 SMap: S_parent: Sequence: R09E10
  Identity: Version: 3
    Name: CGC_name: acs-23 Person_evidence: WBPerson237
            WBPerson4025
      Sequence_name: R09E10.4
      Molecular_name: R09E10.4
      Other_name: CELE_R09E10.4 Accession_evidence: NDB BX284604
      Public_name: acs-23
    DB_info: Database: AceView gene 4L70
        WormQTL gene WBGene00011174
        WormFlux gene WBGene00011174
        NDB locus_tag CELE_R09E10.4
        NCBI gene 187742
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 02 Oct 2015 11:36:38 WBPerson2970 Name_change: CGC_name: acs-23
        3 02 Oct 2015 13:22:07 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: acs
    Allele (47)
    RNASeq_FPKM (74)
    Ortholog (16)
    Paralog: WBGene00011173 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022037 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00013575 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00019920 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020343 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in germ line and in male based on RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sir-2.1 based on microarray; RNA-seq; and tiling array studies. Is affected by five chemicals including multi-walled carbon nanotube; Doxycycline; and paraquat based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: R09E10.4:wp120
      R09E10.4a:wp250
    Corresponding_transcript_history: R09E10.4b:wp250
    Corresponding_pseudogene: R09E10.4
    Associated_feature: WBsf997587
      WBsf1018067
  Experimental_info: Expr_pattern: Expr1012471
      Expr1155295
    Microarray_results (17)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00041071:spe-44_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044037:eat-2_upregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Spermatogenic
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00048762:FOG-3_associated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00050231:male_enriched
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051404:alg-2(ok304)_downregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056471:flcn-1(ok975)_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:F14F7.4_16243-ZK353.3
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Cisplatin_downregulated_tetraploid
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_14
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:rde-3(ne298)_upregulated
      WBPaper00036286:Pattern_G
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045673:colistin_downregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction (15)
  Map_info: Map: IV Position: 4.57324
    Positive: Positive_clone: R09E10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026800
    WBPaper00042257
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene