WormBase Tree Display for Gene: WBGene00009916

WBGene00009916 SMap: S_parent: Sequence: F52A8
  Identity: Version: 1
    Name: Sequence_name: F52A8.3
      Molecular_name: F52A8.3a
        F52A8.3a.1
        CE05910
        F52A8.3b
        CE51863
        F52A8.3b.1
        F52A8.3b.2
      Other_name: CELE_F52A8.3 Accession_evidence: NDB BX284601
      Public_name: F52A8.3
    DB_info: Database: AceView gene 1H900
        WormQTL gene WBGene00009916
        WormFlux gene WBGene00009916
        NDB locus_tag CELE_F52A8.3
        NCBI gene 172484
        RefSeq protein NM_001026304.3
            NM_001348614.4
        TREEFAM TREEFAM_ID TF321089
        TrEMBL UniProtAcc Q20635
            Q6A4I6
        UniProt_GCRP UniProtAcc Q6A4I6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (23)
    RNASeq_FPKM (74)
    GO_annotation: 00081807
    Ortholog (20)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F52A8.3a
      F52A8.3b
    Corresponding_CDS_history: F52A8.3b:wp257
    Corresponding_transcript (3)
    Other_sequence: Acan_isotig16490
      JI459164.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00003730 Inferred_automatically: RNAi_primary
      WBRNAi00047907 Inferred_automatically: RNAi_primary
      WBRNAi00032573 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020328
      Expr1151736
      Expr2003968
      Expr2022189
    Drives_construct: WBCnstr00031819
    Construct_product: WBCnstr00031819
    Microarray_results (23)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00033070:Rhine_downregulated
      WBPaper00037950:A-class-motor-neurons_larva_enriched
      WBPaper00037950:A-class-motor-neurons_larva_SelectivelyEnriched
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00046024:sleep_upregulated_oscillating
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:male-tail_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056617:adr-1_downregulated_L4_transcript
      WBPaper00056617:adr-1_upregulated_embryo_transcript
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059754:C.neoformans_H99_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059763:neuron_acr-2(n2420gf)_regulated
      WBPaper00059763:neuron_expressed
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00061340:Anterior_arcade_cell
      WBPaper00061340:ant_arc_V
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:Excretory_gland
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:F13H6.1_2706-T25F10.3_3473
      WBPaper00061651:DA_enriched
      WBPaper00061651:DB_enriched
      WBPaper00061651:VA_enriched
      WBPaper00061651:VB_enriched
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00062103:neuron_enriched
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062590:Aging_downregulated_intestine
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064532:pals-22(jy3)_downregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:6_0
      WBPaper00065841:6_1
      WBPaper00065841:6_2
      WBPaper00065841:6_3
      WBPaper00065841:14_0
      WBPaper00065841:14_1
      WBPaper00065841:53_0
      WBPaper00065841:61_0
      WBPaper00065841:67_0
      WBPaper00065841:86_0
      WBPaper00065841:126_0
      WBPaper00065841:133_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030839:Larval_A_Class
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00030985:Erwinia_carotovora_upregulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:FedUp
      WBPaper00036286:Pattern_G
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:TA300_up
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00049311:AgNO3_regulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc6390]:male_sex-enriched
    Interaction: WBInteraction000198797
      WBInteraction000251677
      WBInteraction000259533
      WBInteraction000285681
      WBInteraction000289342
      WBInteraction000308005
      WBInteraction000321223
      WBInteraction000415089
      WBInteraction000438097
  Map_info: Positive: Positive_clone: F52A8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 1.91306
  Method: Gene