WormBase Tree Display for Gene: WBGene00009390

WBGene00009390 SMap: S_parent: Sequence: F35C5
  Identity: Version: 1
    Name: Sequence_name: F35C5.1
      Molecular_name: F35C5.1
        F35C5.1.1
        CE35520
      Other_name: CELE_F35C5.1 Accession_evidence: NDB BX284602
      Public_name: F35C5.1
    DB_info: Database: AceView gene 2N173
        WormQTL gene WBGene00009390
        WormFlux gene WBGene00009390
        NDB locus_tag CELE_F35C5.1
        Panther gene CAEEL|WormBase=WBGene00009390|UniProtKB=O45437
          family PTHR37977
        NCBI gene 185261
        RefSeq protein NM_064336.5
        TREEFAM TREEFAM_ID TF322782
        TrEMBL UniProtAcc O45437
        UniProt_GCRP UniProtAcc O45437
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (27)
    RNASeq_FPKM (74)
    Ortholog (15)
    Paralog: WBGene00012174 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00010378 Caenorhabditis elegans From_analysis: Panther
      WBGene00015192 Caenorhabditis elegans From_analysis: Panther
      WBGene00019507 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in AVA; germ line; and hypodermis based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on microarray and RNA-seq studies. Is affected by five chemicals including methylmercuric chloride; manganese chloride; and Sodium Chloride based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F35C5.1
    Corresponding_CDS_history: F35C5.1:wp109
    Corresponding_transcript: F35C5.1.1
    Other_sequence: EL890141.1
      EL887945.1
      EL890642.1
      EL890464.1
    Associated_feature: WBsf990246
      WBsf1013524
  Experimental_info: RNAi_result: WBRNAi00031753 Inferred_automatically: RNAi_primary
      WBRNAi00014300 Inferred_automatically: RNAi_primary
      WBRNAi00046294 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011725
      Expr1150184
      Expr2003308
      Expr2021521
    Microarray_results (15)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044616:alg-3-4_upregulated_gene
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Spermatogenic
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00048611:MnCl2_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056169:rrf-3(pk1426)_upregulated_adult
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:C01G10.14-dct-9_3227
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064158:xpo-1(RNAi)_upregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_14
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:mixed_spermatogenesis-somatic
    Interaction: WBInteraction000317169
      WBInteraction000380204
      WBInteraction000503154
  Map_info: Positive: Positive_clone: F35C5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 12.1318
  Method: Gene