WormBase Tree Display for Gene: WBGene00009238

WBGene00009238 SMap: S_parent: Sequence: F28H7
  Identity: Version: 2
    Name: CGC_name: selt-1.2 Person_evidence: WBPerson5890
      Sequence_name: F28H7.4
      Molecular_name: F28H7.4
        F28H7.4.1
        CE36142
      Other_name: CELE_F28H7.4 Accession_evidence: NDB BX284605
      Public_name: selt-1.2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 29 Nov 2016 11:06:21 WBPerson2970 Name_change: CGC_name: selt-1.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: selt
    Allele (18)
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog (30)
    Paralog: WBGene00007955 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable thioredoxin-disulfide reductase (NADP) activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum membrane. Expressed in AWBL and AWBR. Is an ortholog of human SELENOT (selenoprotein T). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F28H7.4
    Corresponding_CDS_history: F28H7.4:wp114
    Corresponding_transcript: F28H7.4.1
    Associated_feature: WBsf234434
  Experimental_info: RNAi_result: WBRNAi00014084 Inferred_automatically: RNAi_primary
      WBRNAi00045882 Inferred_automatically: RNAi_primary
      WBRNAi00031554 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13335
      Expr13336
      Expr1023996
      Expr1149786
      Expr2015740
      Expr2033973
    Drives_construct: WBCnstr00032349
      WBCnstr00039207
      WBCnstr00039208
    Construct_product: WBCnstr00032349
      WBCnstr00039208
    Microarray_results (16)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00041071:spe-44_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045257:bar-1(ga80)_downregulated
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048923:Aging_regulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00050231:male_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00051039:germline_enriched
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:clk-1(qm30)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055827:pfd-6(gk493446)_upregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059839:S.maltophilia_regulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:hmc_homolog
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:Y40H4A.2-ZK1053.2
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064502:spe-44(fx110)_downregulated
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064721:fasn-1(g14)_upregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065841:6_1
      WBPaper00065841:14_1
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_18
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00030985:Erwinia_carotovora_downregulated
      WBPaper00031850:mdt-15(RNAi)_downregulated
      WBPaper00036286:Pattern_E
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045673:colistin_downregulated
      [cgc6390]:spermatogenesis-enriched
    Interaction (43)
  Map_info: Map: V Position: 2.75499
    Positive: Positive_clone: F28H7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00051003
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene