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WormBase Tree Display for Gene: WBGene00009179

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Name Class

WBGene00009179SMapS_parentSequenceF26H11
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classkbp
Allele (21)
StrainWBStrain00037710
RNASeq_FPKM (74)
GO_annotation (12)
Ortholog (12)
ParalogWBGene00022674Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionAutomated_descriptionPredicted to be involved in cell division. Located in kinetochore. Part of Ndc80 complex.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF26H11.1
Corresponding_CDS_historyF26H11.1:wp40
Corresponding_transcriptF26H11.1.1
Other_sequenceCBC05709_1
Associated_featureWBsf650746
WBsf650747
WBsf650748
WBsf666365
WBsf990697
WBsf224271
Experimental_infoRNAi_result (20)
Expr_patternExpr3441
Expr3444
Expr1024693
Expr1034004
Expr1149611
Expr2012905
Expr2031139
Drives_constructWBCnstr00032395
Construct_productWBCnstr00000328
WBCnstr00000896
WBCnstr00032395
AntibodyWBAntibody00000762
WBAntibody00001000
Microarray_results (15)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032425:up_in_lin-35
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-35_upregulated
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00040285:H2S_24hr_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00046795:starvation_downregulated
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048611:MnCl2_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_downregulated_N2
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_72h_regulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00054758:alg-2(ok304)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056284:ints-6(t1903)_downregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:ADA_ADE_grandparent
WBPaper00061340:AVH_parent
WBPaper00061340:DVC_parent
WBPaper00061340:Neuroblast_ASE_ASJ_AUA
WBPaper00061340:Neuroblast_ASJ_AUA
WBPaper00061340:Neuroblast_IL1_IL2
WBPaper00061340:Neuroblast_URX_CEPDx
WBPaper00061340:Parents_of_U_F_B_DVA
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061340:Parent_of_MI_pm1DR
WBPaper00061340:PLM_ALN_great_grandparent
WBPaper00061340:RIA_parent
WBPaper00061341:28C_48h_downregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:F54E7.8-orc-5_6376
WBPaper00062056:dpl-1(n2994)_upregulated
WBPaper00062056:efl-1(se1)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we31)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_5_3
cgc4489_group_2
WBPaper00025032:cluster_38
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00036286:Pattern_F
WBPaper00037611:RNP-8-associated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(186_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_E
[cgc6390]:intrinsic
Interaction (33)
Map_infoMapIIPosition22.9624Error0.00105
PositivePositive_cloneF26H11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00024437
WBPaper00024863
WBPaper00025139
WBPaper00027235
WBPaper00032153
WBPaper00043628
WBPaper00044471
WBPaper00045114
WBPaper00064107
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene