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WormBase Tree Display for Gene: WBGene00009030

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Name Class

WBGene00009030SMapS_parentSequenceF21H7
IdentityVersion2
Name (5)
DB_infoDatabaseAceViewgene5Q715
WormQTLgeneWBGene00009030
WormFluxgeneWBGene00009030
NDBlocus_tagCELE_F21H7.4
PanthergeneCAEEL|WormBase=WBGene00009030|UniProtKB=O45388
familyPTHR47517
NCBIgene180089
RefSeqproteinNM_074696.5
TREEFAMTREEFAM_IDTF315870
TrEMBLUniProtAccO45388
UniProt_GCRPUniProtAccO45388
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
209 Oct 2007 15:40:27WBPerson2970Name_changeCGC_nameclec-233
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (68)
RNASeq_FPKM (74)
Ortholog (46)
Paralog (126)
Structured_descriptionAutomated_descriptionEnriched in several structures, including germ line; head mesodermal cell; muscle cell; pharyngeal-intestinal valve cell; and rectal gland cell based on proteomic; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; glp-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including manganese chloride; stavudine; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; and C-type lectin fold.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF21H7.4
Corresponding_transcriptF21H7.4.1
Other_sequenceCSC02137_1
FD515894.1
CR05103
CRC02006_1
Associated_featureWBsf655139
WBsf662144
WBsf662145
WBsf662146
WBsf233087
Experimental_infoRNAi_resultWBRNAi00112635Inferred_automaticallyRNAi_primary
WBRNAi00045257Inferred_automaticallyRNAi_primary
WBRNAi00008678Inferred_automaticallyRNAi_primary
Expr_patternExpr4945
Expr1010419
Expr1033937
Expr1149188
Expr2010139
Expr2028380
Drives_constructWBCnstr00012358
WBCnstr00032511
Construct_productWBCnstr00032511
Microarray_results (16)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041071:spe-44_downregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048611:MnCl2_upregulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_enriched
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053599:female_vs_male_downregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053909:N2_vs_CB4856_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056284:ints-6(t1903)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00059987:Wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00060921:tbh-1(ok1196)_downregulated
WBPaper00060921:tph-1(mg280)_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:BWM_anterior
WBPaper00061340:BWM_far_posterior
WBPaper00061340:mu_int_mu_anal
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_downregulated_OP50
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:mtd-1-mec-18
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061651:Rectal_gland_enriched
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062167:mbl-1(tm1563)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062534:fat-P-80_upregulated_ech-6(RNAi)
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065841:30_0
WBPaper00065841:30_3
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_14
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00035892:KIM5_vs_OP50_Up
WBPaper00035892:Y.pestis_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:TA300_up
WBPaper00040998:nhr-80_regulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045673:colistin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:male_soma-enriched
Interaction (63)
Map_infoMapVPosition9.85735Error0.001091
PositivePositive_cloneF21H7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031003
WBPaper00031686
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene