WormBase Tree Display for Gene: WBGene00007858

WBGene00007858 SMap: S_parent: Sequence: C31H5
  Identity: Version: 1
    Name: Sequence_name: C31H5.7
      Molecular_name: C31H5.7
        C31H5.7.1
        CE34724
      Other_name: CELE_C31H5.7 Accession_evidence: NDB BX284601
      Public_name: C31H5.7
    DB_info: Database: AceView gene 1J617
        WormQTL gene WBGene00007858
        WormFlux gene WBGene00007858
        NDB locus_tag CELE_C31H5.7
        NCBI gene 3565903
        RefSeq protein NM_001025842.3
        TREEFAM TREEFAM_ID TF322947
        TrEMBL UniProtAcc Q7YTS8
        UniProt_GCRP UniProtAcc Q7YTS8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01500105
      WBVar01499739
      WBVar01432423
      WBVar01499786
      WBVar01499054
      WBVar00658533
      WBVar00658534
      WBVar01500059
      WBVar01498959
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00044377 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00015848 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00303369 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including ABplpppaaa; I5 neuron; dopaminergic neurons; male distal tip cell; and somatic gonad precursor based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including Zidovudine; Psoralens; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C31H5.7
    Corresponding_transcript: C31H5.7.1
    Associated_feature: WBsf643571
      WBsf218245
  Experimental_info: RNAi_result (2)
    Expr_pattern: Expr1023476
      Expr1145662
      Expr2001294
      Expr2019517
    Microarray_results (11)
    Expression_cluster: WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048690:hermaphrodite-Z1-Z4_enriched
      WBPaper00048690:male-Z1-Z4_enriched
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00050231:male_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053318:Aging_upregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_upregulated_mRNA
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:male-seminal-vesicle_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056826:SGP_biased
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061340:I5
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061422:let-607(RNAi)_regulated
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061636:atracurium_downregulated
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064158:xpo-1(RNAi)_upregulated
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065392:Lb.delbrueckii_upregulated
      WBPaper00065392:Lb.gasseri_upregulated
      WBPaper00065392:Lb.reuteri_upregulated
      WBPaper00065392:Lb.rhamnosus_upregulated
      WBPaper00065392:P.pentosaceus_upregulated
      WBPaper00065841:55_0
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_9
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00045673:colistin_upregulated
  Map_info: Positive: Positive_clone: C31H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 3.4359
  Method: Gene