WormBase Tree Display for Gene: WBGene00007786

WBGene00007786 SMap: S_parent: Sequence: C27H6
  Identity: Version: 2
    Name: CGC_name: rmd-2 Person_evidence: WBPerson2692
            WBPerson552
      Sequence_name: C27H6.4
      Molecular_name: C27H6.4a
        C27H6.4a.1
        CE08428
        C27H6.4b
        CE45113
        C27H6.4c
        CE42479
        C27H6.4b.1
        C27H6.4c.1
      Other_name: CELE_C27H6.4 Accession_evidence: NDB BX284605
      Public_name: rmd-2
    DB_info: Database: AceView gene 5K464
        WormQTL gene WBGene00007786
        WormFlux gene WBGene00007786
        NDB locus_tag CELE_C27H6.4
        Panther gene CAEEL|WormBase=WBGene00007786|UniProtKB=Q8MQB5
          family PTHR16056
        NCBI gene 179391
        RefSeq protein NM_171523.6
            NM_001129394.5
            NM_171522.7
        TREEFAM TREEFAM_ID TF315854
        TrEMBL UniProtAcc Q8MQB5
            B2D6P1
            P90762
        UniProt_GCRP UniProtAcc Q8MQB5
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Nov 2007 10:25:06 WBPerson2970 Name_change: CGC_name: rmd-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rmd
    Allele (34)
    Possibly_affected_by: WBVar02154061
    RNASeq_FPKM (74)
    GO_annotation: 00005821
      00005822
      00005823
      00005824
      00005825
      00005826
      00084529
    Ortholog (39)
    Paralog: WBGene00007190 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012976 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00012977 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009369 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00011501 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015855 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00018125 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020711 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020070 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable microtubule binding activity. Predicted to be located in mitochondrion; mitotic spindle pole; and spindle microtubule. Is an ortholog of human RMDN2 (regulator of microtubule dynamics 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (3)
    Corresponding_CDS_history: C27H6.4:wp82
      C27H6.4b:wp215
    Corresponding_transcript: C27H6.4a.1
      C27H6.4b.1
      C27H6.4c.1
    Other_sequence (70)
    Associated_feature: WBsf652954
      WBsf652955
      WBsf1001030
      WBsf1001031
      WBsf1020252
  Experimental_info: RNAi_result: WBRNAi00041383 Inferred_automatically: RNAi_primary
      WBRNAi00081133 Inferred_automatically: RNAi_primary
      WBRNAi00011282 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022284
      Expr1033379
      Expr1145417
      Expr2015371
      Expr2033605
    Drives_construct: WBCnstr00033483
    Construct_product: WBCnstr00033483
    Microarray_results (32)
    Expression_cluster: WBPaper00027022:tax-6(jh107)_upregulated
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037047:insoluble_protein
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040134:nhr-49(RNAi)_regulated_protein
      WBPaper00040209:B.thuringiensis_downregulated_MY15
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_upregulated_HeatShock
      WBPaper00045050:csr-1(hypomorph)_downregulated
      WBPaper00045486:starvation_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00045774:clk-1_upregulated_CoQ10_independent
      WBPaper00046303:P.aeruginosa_downregulated_protein
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00048644:germline_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00051558:aging_regulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053615:SMO-1_target
      WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056826:SGP_biased
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060886:met-2(n4256)_downregulated
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:Intestine
      WBPaper00061527:mlt-9_22518-F33D4.6_14044
      WBPaper00061651:AFD_enriched
      WBPaper00061651:ASEL_enriched
      WBPaper00061651:AWC_OFF_enriched
      WBPaper00061651:AWC_ON_enriched
      WBPaper00061651:Rectal_gland_enriched
      WBPaper00061651:Spermatheca_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064163:ZNFX-1_interacting_young-adult
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064716:paraquat_upregulated
      WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:AFD_depleted
      WBPaper00065373:Cisplatin_upregulated_WT
      cgc4386_cluster_2_3
      cgc4489_group_3
      WBPaper00025032:cluster_91
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00030985:Photorhabdus_luminescens_downregulated
      WBPaper00038427:lin-54_germline_changed
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
    Interaction: WBInteraction000250493
      WBInteraction000551421
      WBInteraction000571076
      WBInteraction000571116
      WBInteraction000576556
      WBInteraction000577838
      WBInteraction000580558
  Map_info: Map: V Position: 2.22625 Error: 0.000679
    Positive: Positive_clone: C27H6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00034662
    WBPaper00038491
    WBPaper00055090
    WBPaper00056909
    WBPaper00061639
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene