WormBase Tree Display for Gene: WBGene00007770

WBGene00007770 SMap: S_parent: Sequence: C27C7
  Identity: Version: 2
    Name: CGC_name: nhr-259 Person_evidence: WBPerson600
      Sequence_name: C27C7.8
      Molecular_name: C27C7.8
        C27C7.8.1
        CE18538
      Other_name: CELE_C27C7.8 Accession_evidence: NDB BX284601
      Public_name: nhr-259
    DB_info: Database: AceView gene 1M25
        WormQTL gene WBGene00007770
        WormFlux gene WBGene00007770
        NDB locus_tag CELE_C27C7.8
        Panther gene CAEEL|WormBase=WBGene00007770|UniProtKB=Q9U3N8
          family PTHR46397
        NCBI gene 182960
        RefSeq protein NM_060521.3
        TREEFAM TREEFAM_ID TF321941
        TrEMBL UniProtAcc Q9U3N8
        UniProt_GCRP UniProtAcc Q9U3N8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-259
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele (15)
    Strain: WBStrain00036769
    RNASeq_FPKM (74)
    GO_annotation: 00100356
    Ortholog: WBGene00162925 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00062097 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00148585 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00034413 Caenorhabditis briggsae From_analysis: WormBase-Compara
      Csp5_scaffold_00371.g10309 Caenorhabditis sinica From_analysis: WormBase-Compara
      Pan_g1318 Panagrellus redivivus From_analysis: WormBase-Compara
      chrI_pilon.g2266 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00301869 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301928 Trichuris muris From_analysis: WormBase-Compara
    Paralog (43)
    Structured_description: Automated_description: Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C27C7.8
    Corresponding_transcript: C27C7.8.1
    Associated_feature: WBsf985286
      WBsf1010714
      WBsf218532
  Experimental_info: RNAi_result: WBRNAi00041339 Inferred_automatically: RNAi_primary
      WBRNAi00004907 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020776
      Expr1145379
    Drives_construct: WBCnstr00033494
    Construct_product: WBCnstr00033494
    Microarray_results (19)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00044760:somatic_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046024:sleep_downregulated_oscillating
      WBPaper00046887:WNT-target
      WBPaper00049732:blmp-1(tm548);daf-7(e1372ts)_vs_daf-7(e1372ts)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00056617:adr-1_upregulated_L4_transcript
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064532:pals-22(jy3)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00066204:CdCl2_upregulated_mRNA
      cgc4489_group_20
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032948:FedUp
      WBPaper00032948:MoltOssilate
      WBPaper00034739:N2lessDR1350
      WBPaper00034739:RIL17lessRIL14
      WBPaper00035560:ahr-1_downregulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036286:Pattern_I
      WBPaper00036383:ash-2_L3_regulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040116:pRJ-FR.5_down_regulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040876:mir-35_upregulated
      WBPaper00040998:nhr-66_regulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00056330:mrps-5(RNAi)_upregulated
    Interaction (93)
  Map_info: Map: I Position: 8.64853 Error: 0.017761
    Positive: Positive_clone: C27C7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene