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WormBase Tree Display for Gene: WBGene00007496

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Name Class

WBGene00007496SMapS_parentSequenceC09G9
IdentityVersion2
NameCGC_namenpax-4Paper_evidenceWBPaper00003599
Person_evidenceWBPerson260
Sequence_nameC09G9.7
Molecular_nameC09G9.7a
C09G9.7a.1
CE40404
C09G9.7b
CE47237
C09G9.7b.1
Other_nameCELE_C09G9.7Accession_evidenceNDBBX284604
Public_namenpax-4
DB_infoDatabaseAceViewgene4J642
WormQTLgeneWBGene00007496
WormFluxgeneWBGene00007496
NDBlocus_tagCELE_C09G9.7
PanthergeneCAEEL|WormBase=WBGene00007496|UniProtKB=Q17876
familyPTHR45636
NCBIgene182466
RefSeqproteinNM_001268416.3
NM_001268417.2
TrEMBLUniProtAccH9G2Q0
Q17876
UniProt_GCRPUniProtAccQ17876
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
228 May 2010 15:24:57WBPerson2970Name_changeCGC_namenpax-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnpax
Allele (39)
RNASeq_FPKM (74)
GO_annotation00059517
00059518
00059519
00115599
00115600
Ortholog (24)
ParalogWBGene00003937Caenorhabditis elegansFrom_analysisTreeFam
WBGene00018591Caenorhabditis elegansFrom_analysisTreeFam
WBGene00017664Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00011257Caenorhabditis elegansFrom_analysisTreeFam
Structured_descriptionConcise_descriptionnpax-4 is a divergent Paired domain-only protein; it encodes only the first part of the Paired domain (the PAI subdomain) and an EH1 (octapeptide) motif; the Paired domain is a DNA-binding domain; the PAI subdomain is likely also DNA-binding; npax genes mostly diverged from complete Paired domain-only and/or Paired homeobox genes; no obvious orthologs are present in arthropods or vertebrates; npax-4 is involved in embryo development and lipid storage; npax-4 is expressed in the pseudocoelom and the body wall musculature.Paper_evidenceWBPaper00005655
WBPaper00025054
WBPaper00029055
WBPaper00045974
WBPaper00046864
WBPaper00003599
WBPaper00051112
Person_evidenceWBPerson83
Curator_confirmedWBPerson324
Date_last_updated20 Apr 2017 00:00:00
Automated_descriptionPredicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Expressed in body wall musculature and pseudocoelom.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (5)
Experimental_infoRNAi_resultWBRNAi00040250Inferred_automaticallyRNAi_primary
WBRNAi00023935Inferred_automaticallyRNAi_primary
WBRNAi00023647Inferred_automaticallyRNAi_primary
WBRNAi00092958Inferred_automaticallyRNAi_primary
WBRNAi00028747Inferred_automaticallyRNAi_primary
WBRNAi00023042Inferred_automaticallyRNAi_primary
WBRNAi00023135Inferred_automaticallyRNAi_primary
WBRNAi00010557Inferred_automaticallyRNAi_primary
Expr_patternExpr7428
Expr1018200
Expr1144319
Expr2014364
Expr2032605
Drives_constructWBCnstr00012571
WBCnstr00033694
Construct_productWBCnstr00017311
WBCnstr00033694
Microarray_results (18)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00040285:H2S_24hr_upregulated
WBPaper00044736:rising_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045050:drh-3 (ne4253)_upregulated
WBPaper00045774:clk-1_downregulated
WBPaper00045971:tunicamycin_upregulated_RtcB(null)
WBPaper00045974:NSM_enriched_totalRNA_tiling
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049736:15deg-then-25deg(12hr)_upregulated_N2
WBPaper00049736:daf-2(e1370)_downregulated_15deg-then-25deg(12hr)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00051558:aging_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055226:adr-1(tm668)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060661:sensory-neuron_depleted
WBPaper00061341:28C_24h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:ZC373.2-Y62H9A.6_1596
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
cgc4489_group_2
WBPaper00031003:hlh_1_enriched
WBPaper00036123:Cadmium_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036286:Pattern_D
WBPaper00037695:WC_5-day
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
[cgc6390]:Cluster_C
InteractionWBInteraction000226046
WBInteraction000349789
WBInteraction000437237
WBInteraction000445250
Map_infoMapIVPosition3.99433Error0.002002
PositivePositive_cloneC09G9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00003599
WBPaper00061738
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene