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WormBase Tree Display for Gene: WBGene00004340

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Name Class

WBGene00004340EvidenceCGC_data_submission
SMapS_parentSequenceF31E3
IdentityVersion1
Name (5)
DB_infoDatabaseAceViewgene3I63
WormQTLgeneWBGene00004340
WormFluxgeneWBGene00004340
NDBlocus_tagCELE_F31E3.3
PanthergeneCAEEL|WormBase=WBGene00004340|UniProtKB=P53016
familyPTHR11669
NCBIgene175976
RefSeqproteinNM_066120.8
SwissProtUniProtAccP53016
TREEFAMTREEFAM_IDTF314424
UniProt_GCRPUniProtAccP53016
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrfc
Allele (15)
StrainWBStrain00051259
RNASeq_FPKM (74)
GO_annotation (14)
Ortholog (35)
ParalogWBGene00004338Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004339Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018409Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to contribute to DNA clamp loader activity. Involved in DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Is an ortholog of human RFC4 (replication factor C subunit 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF31E3.3
Corresponding_transcriptF31E3.3.1
Other_sequence (15)
Associated_featureWBsf645307
WBsf225184
WBsf225185
Experimental_infoRNAi_resultWBRNAi00082612Inferred_automaticallyRNAi_primary
WBRNAi00046020Inferred_automaticallyRNAi_primary
WBRNAi00002743Inferred_automaticallyRNAi_primary
WBRNAi00002514Inferred_automaticallyRNAi_primary
WBRNAi00007834Inferred_automaticallyRNAi_primary
WBRNAi00082392Inferred_automaticallyRNAi_primary
WBRNAi00008733Inferred_automaticallyRNAi_primary
WBRNAi00046019Inferred_automaticallyRNAi_primary
Expr_patternExpr1017784
Expr1032158
Expr1149917
Expr2015306
Expr2033540
Drives_constructWBCnstr00035555
Construct_productWBCnstr00035555
Microarray_results (19)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00033444:BacteriaDiet_regulated
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00038289:oocyte_protein
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044746:aging_upregulated_Day5
WBPaper00044760:germline_specific
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050225:flp-6(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:zidovudine_72h_regulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:Cold_upregulated_transcript
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00059254:CSR-1_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:Ciliated_amphid_neuron
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:Excretory_cell_parent
WBPaper00061340:g2_parent
WBPaper00061340:I1_parent
WBPaper00061340:I2_grandparent
WBPaper00061340:Neuroblast_AIZ_FLP_RMG
WBPaper00061341:28C_24h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:pch-2-B0393.3
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we31)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064201:SNA-3_interacting
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064502:nhr-23(kry61);spe-44(fx110)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065149:lin-52(n771)_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_5_3
cgc4489_group_2
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_C
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00036429:glp-1(oz112)_upregulated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00038060:SUMO-1_upregulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (311)
Map_infoMapIIIPosition-0.862057Error0.003826
PositivePositive_cloneF31E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005880
WBPaper00026952
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Boulton S, Vidal M]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene