WormBase Tree Display for Gene: WBGene00000701

WBGene00000701 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: F54D1
  Identity: Version: 1
    Name: CGC_name: col-127 Person_evidence: WBPerson345
      Sequence_name: F54D1.3
      Molecular_name: F54D1.3
        F54D1.3.1
        CE05937
      Other_name: CELE_F54D1.3 Accession_evidence: NDB BX284604
      Public_name: col-127
    DB_info: Database: AceView gene 4M30
        WormQTL gene WBGene00000701
        WormFlux gene WBGene00000701
        NDB locus_tag CELE_F54D1.3
        NCBI gene 186228
        RefSeq protein NM_069715.3
        TREEFAM TREEFAM_ID TF316783
        TrEMBL UniProtAcc G5EFU8
        UniProt_GCRP UniProtAcc G5EFU8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele: WBVar01500079
      WBVar01498996
      WBVar01581774
      WBVar01499925
      WBVar01499585
      WBVar01499586
      WBVar02037168
      WBVar01500245
    RNASeq_FPKM (74)
    GO_annotation: 00107693
    Ortholog (55)
    Paralog (39)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54D1.3
    Corresponding_CDS_history: F54D1.3:wp228
    Corresponding_transcript: F54D1.3.1
    Other_sequence (79)
    Associated_feature: WBsf230851
  Experimental_info: RNAi_result: WBRNAi00048279 Inferred_automatically: RNAi_primary
      WBRNAi00015595 Inferred_automatically: RNAi_primary
      WBRNAi00048280 Inferred_automatically: RNAi_primary
    Expr_pattern (3)
    Drives_construct: WBCnstr00037356
    Construct_product: WBCnstr00037356
    Microarray_results: SMD_F54D1.3
      SMD_F54D1.4:2
      172794_x_at
      189978_s_at
      Aff_F54D1.2
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00036231:long-telomeres_downregulated
      WBPaper00037682:sma-2_sma-4_downregulated
      WBPaper00040285:H2S_12hr_downregulated
      WBPaper00040285:H2S_24hr_downregulated
      WBPaper00043945:MeHg_downregulated
      WBPaper00044786:emr-1(gk119)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045861:ash-2(tm1095)_upregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00050109:rBmTX14_upregulated
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00053020:sta-1(ok587)_downregulated
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_adult
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060703:nas-38(ok3407)_downregulated
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061274:hypergravity_15xg_upregulated
      WBPaper00061527:172183_at-176110_at
      WBPaper00061613:human-alpha-Synuclein(A53T)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
      WBPaper00061653:alh-4(hj221)_downregulated
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00062197:mec-8_upregulated_TRN
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064505:tamoxifen_downregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065074:glna(-)_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065995:M.humicola-extract_upregulated_N2
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4386_cluster_1_1
      cgc4489_group_3
      WBPaper00005124:cholesterol_10-9M_regulated
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027111:eri-1(mg366)_downregulated
      WBPaper00027111:rde-3(ne298)_downregulated
      WBPaper00027111:rde-3(r459)_downregulated
      WBPaper00028948:cep-1(gk138)+UV_downregulated
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
      WBPaper00045865:biofilm_downregulated_B
      WBPaper00045960:L4-lethargus_upregulated
      [cgc6390]:Cluster_C
      [cgc6390]:male_sex-enriched
    Interaction (90)
  Map_info: Map: IV Position: 4.93428
    Positive: Positive_clone: F54D1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059172
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene