WormBase Tree Display for Gene: WBGene00000627

WBGene00000627 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: T28F2
  Identity: Version: 1
    Name: CGC_name: col-50 Person_evidence: WBPerson345
      Sequence_name: T28F2.6
      Molecular_name: T28F2.6
        T28F2.6.1
        CE14361
        T28F2.6.2
      Other_name: CELE_T28F2.6 Accession_evidence: NDB BX284601
      Public_name: col-50
    DB_info: Database: AceView gene 1E218
        WormQTL gene WBGene00000627
        WormFlux gene WBGene00000627
        NDB locus_tag CELE_T28F2.6
        Panther gene CAEEL|WormBase=WBGene00000627|UniProtKB=O01662
          family PTHR24637
        NCBI gene 189050
        RefSeq protein NM_001393238.1
        TREEFAM TREEFAM_ID TF319043
        TrEMBL UniProtAcc O01662
        UniProt_GCRP UniProtAcc O01662
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (31)
    RNASeq_FPKM (74)
    GO_annotation: 00025256
      00025257
      00025258
      00107633
    Ortholog (25)
    Paralog (27)
    Structured_description: Concise_description: col-50 encodes a cuticle collagen. Curator_confirmed: WBPerson1843
          Date_last_updated: 03 Apr 2007 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result: WBRNAi00036095 Inferred_automatically: RNAi_primary
      WBRNAi00054430 Inferred_automatically: RNAi_primary
      WBRNAi00004341 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021300
      Expr1030370
      Expr1157974
      Expr2010402
      Expr2028644
    Drives_construct: WBCnstr00037417
    Construct_product: WBCnstr00037417
    Microarray_results (19)
    Expression_cluster: WBPaper00031040:Cluster_5
      WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032031:DConiospora_upregulated_OligoArray_24h
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00048926:miaserin_upregulated_adult-day3
      WBPaper00049368:daf-2(e1370)_upregulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:HeatShock_upregulated_hsf-1(+)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050801:SET-4_dauer_regulome
      WBPaper00050990:arcade_intestinal-valve_enriched
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055897:heat-shock_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L1
      WBPaper00061040:eat-2(ad1116)_downregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061274:microgravity_downregulated
      WBPaper00061340:IL1_parent
      WBPaper00061340:RMED
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:col-84-col-45
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00063926:chd-7(gk290)_upregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064494:postdauer_downregulated_WholeAnimal
      WBPaper00064632:daf-2(e1370)_upregulated_intestine
      WBPaper00064788:ketamine_upregulated
      WBPaper00064850:glh-1(sam65)_upregulated
      WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
      WBPaper00065315:mating_downregulated_Day2-7
      WBPaper00065841:0_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4386_cluster_2_4
      cgc4489_group_9
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00041207:CE_dauer_up
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00049311:sAg-MNP_regulated
      WBPaper00055899:nitroguanidine_regulated
    Interaction: WBInteraction000318147
      WBInteraction000378892
      WBInteraction000401032
      WBInteraction000417258
      WBInteraction000419157
      WBInteraction000434872
      WBInteraction000448009
      WBInteraction000469617
      WBInteraction000472066
      WBInteraction000472666
  Map_info: Map: I Position: -3.04174 Error: 0.009173
    Positive: Positive_clone: T28F2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00063926
    WBPaper00064788
    WBPaper00065080
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene