WormBase Tree Display for Gene: WBGene00000204

WBGene00000204 Evidence: Paper_evidence: WBPaper00005843
  SMap: S_parent: Sequence: C35D10
  Identity: Version: 1
    Name: CGC_name: arx-6 Person_evidence: WBPerson633
      Sequence_name: C35D10.16
      Molecular_name: C35D10.16
        C35D10.16.1
        CE28899
      Other_name: CELE_C35D10.16 Accession_evidence: NDB BX284603
      Public_name: arx-6
    DB_info: Database: AceView gene 3F969
        WormQTL gene WBGene00000204
        WormFlux gene WBGene00000204
        NDB locus_tag CELE_C35D10.16
        Panther gene CAEEL|WormBase=WBGene00000204|UniProtKB=P58798
          family PTHR22629
        NCBI gene 175650
        RefSeq protein NM_065619.7
        SwissProt UniProtAcc P58798
        TREEFAM TREEFAM_ID TF105621
        UniProt_GCRP UniProtAcc P58798
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: arx
    Allele: WBVar00824394
      WBVar00824395
      WBVar00824396
      WBVar00824397
      WBVar00824398
      WBVar00824399
      WBVar00052421
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP3228
    Ortholog (36)
    Structured_description (2)
  Disease_info: Potential_model: DOID:14250 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:707)
  Molecular_info: Corresponding_CDS: C35D10.16
    Corresponding_transcript: C35D10.16.1
    Other_sequence (44)
    Associated_feature: WBsf645130
      WBsf224819
      WBsf224820
      WBsf224821
      WBsf224822
    Transcription_factor: WBTranscriptionFactor000417
  Experimental_info: RNAi_result (11)
    Expr_pattern: Chronogram620
      Expr1010875
      Expr1030123
      Expr1145992
      Expr2009439
      Expr2027676
    Drives_construct: WBCnstr00002865
      WBCnstr00037666
    Construct_product: WBCnstr00037666
    Microarray_results (18)
    Expression_cluster: WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038118:aak-2(gt33)_upregulated
      WBPaper00038118:stress_upregulated_N2
      WBPaper00038289:oocyte_protein
      WBPaper00041072:UTX-1_interacting_protein
      WBPaper00041222:unc-120(st364)_downregulated
      WBPaper00041506:P3_enriched
      WBPaper00043951:insoluble_protein_day16_N2
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046691:P1_enriched
      WBPaper00048923:Aging_regulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00054571:BPA_F3_germline_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061818:ELKS-1_interacting
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064716:paraquat_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065993:glp-1(e2141)_downregulated
      cgc4386_cluster_4_4
      cgc4489_group_2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      [cgc5767]:cluster_6
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(23_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (29)
  Map_info: Map: III Position: -2.41157 Error: 0.000732
    Positive: Positive_clone: C35D10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005843
    WBPaper00027309
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection was previously incorrectly assigned to the adjacent ORF .1a and .1b [krb 030623] Person_evidence: WBPerson651
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene