WormBase Tree Display for Gene: WBGene00004880

WBGene00004880 SMap: S_parent: Sequence: Y48G8AL
  Identity: Version: 1
    Name: CGC_name: smg-2 Person_evidence: WBPerson261
      Sequence_name: Y48G8AL.6
      Molecular_name: Y48G8AL.6
        Y48G8AL.6.1
        CE28367
      Other_name: mab-11
        Y48G8A_3304.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y48G8AL.6 Accession_evidence: NDB BX284601
      Public_name: smg-2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (12)
  Molecular_info: Corresponding_CDS: Y48G8AL.6
    Corresponding_transcript: Y48G8AL.6.1
    Other_sequence (48)
    Associated_feature: WBsf217194
      WBsf217195
  Experimental_info: RNAi_result (15)
    Expr_pattern: Expr7011
      Expr7979
      Expr13326
      Expr1018867
      Expr1032419
      Expr1160418
      Expr2015908
      Expr2034141
    Drives_construct: WBCnstr00003234
    Regulate_expr_cluster: WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
    Antibody: WBAntibody00000979
    Microarray_results (20)
    Expression_cluster: WBPaper00032031:DConiospora_upregulated_cDNA_12h
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048910:mRNA-interacting_protein
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051352:Long-Term-Association-Memory_downregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053615:SMO-1_target
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055013:HMG-3_interacting_protein
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059605:MUT-16_interacting
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:mtr-4_1623-W03F9.10_103
      WBPaper00062123:GLH-1_interacting
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_upregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064080:let-7_miRNA_interacting
      WBPaper00064080:miR-58_miRNA_interacting
      WBPaper00064163:ZNFX-1_interacting_embryo
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00065995:M.humicola-extract_downregulated_old-1(ok1273)
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00029437:dcr-1_downregulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00035905:FBF-1_Associated
      WBPaper00040821:Au-NP_regulated
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00053236:Starvation_regulated_N2
    Interaction (108)
  Map_info: Map: I Position: -16.9122 Error: 0.119036
    Well_ordered
    Positive: Positive_clone: Y48G8A
        Y48G8AL Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: 2_point: 2503
        2504
      Multi_point: 979
        5345
    Landmark_gene
  Reference: WBPaper00000922
    WBPaper00001009
    WBPaper00001013
    WBPaper00001192
    WBPaper00001437
    WBPaper00001813
    WBPaper00001850
    WBPaper00001972
    WBPaper00002463
    WBPaper00002875
    WBPaper00002921
    WBPaper00003389
    WBPaper00003474
    WBPaper00003648
    WBPaper00004313
    WBPaper00004325
    WBPaper00004605
    WBPaper00005667
    WBPaper00005723
    WBPaper00012629
    WBPaper00012633
    WBPaper00013705
    WBPaper00013706
    WBPaper00013745
    WBPaper00013780
    WBPaper00013850
    WBPaper00013926
    WBPaper00014435
    WBPaper00014478
    WBPaper00014578
    WBPaper00015422
    WBPaper00015520
    WBPaper00016504
    WBPaper00016512
    WBPaper00017837
    WBPaper00018327
    WBPaper00020895
    WBPaper00022008
    WBPaper00022610
    WBPaper00022812
    WBPaper00022919
    WBPaper00023177
    WBPaper00023782
    WBPaper00024340
    WBPaper00024418
    WBPaper00024434
    WBPaper00024516
    WBPaper00026593
    WBPaper00026596
    WBPaper00026602
    WBPaper00026761
    WBPaper00027644
    WBPaper00028417
    WBPaper00029295
    WBPaper00030791
    WBPaper00031120
    WBPaper00031852
    WBPaper00032116
    WBPaper00032237
    WBPaper00033013
    WBPaper00033152
    WBPaper00034522
    WBPaper00035245
    WBPaper00035262
    WBPaper00036048
    WBPaper00038491
    WBPaper00040453
    WBPaper00042599
    WBPaper00044888
    WBPaper00045737
    WBPaper00047131
    WBPaper00049407
    WBPaper00049828
    WBPaper00050564
    WBPaper00052934
    WBPaper00053308
    WBPaper00055090
    WBPaper00058222
    WBPaper00060662
    WBPaper00060878
    WBPaper00063430
    WBPaper00064214
    WBPaper00064293
    WBPaper00064339
    WBPaper00064636
  Method: Gene