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WormBase Tree Display for Gene: WBGene00004332

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Name Class

WBGene00004332SMapS_parentSequenceY18H1A
IdentityVersion2
NameCGC_namerec-1Person_evidenceWBPerson533
WBPerson1795
Sequence_nameY18H1A.7
Molecular_nameY18H1A.7a
Y18H1A.7a.1
CE33587
Y18H1A.7b
CE49243
Y18H1A.7b.1
Other_nameCELE_Y18H1A.7Accession_evidenceNDBBX284601
Public_namerec-1
DB_infoDatabaseNDBlocus_tagCELE_Y18H1A.7
NCBIgene171664
RefSeqproteinNM_058372.8
NM_001306247.3
TrEMBLUniProtAccV6CLD8
Q9BL91
UniProt_GCRPUniProtAccQ9BL91
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
213 Oct 2015 08:38:50WBPerson2970EventAcquires_mergeWBGene00021211
Name_changeSequence_nameY18H1A.7
Acquires_mergeWBGene00021211
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrec
Reference_alleleWBVar00241753
Allele (41)
Legacy_informations180 : general enhancer of meiotic recombination. ES1.
Increase recomb.
See also s180
[Rose AM ] increases meiotic recombination in gene clusters, reduces recombination on chromosome arms, distribution of crossovers in Rec-1 approximates physical map. ES1 ME3 NA1.
[C.elegansII] s180 : increases meiotic recombination in gene clusters, reduces recombination on chromosome arms; distribution of crossovers in Rec-1 approximates physical map. ES1, ME3. NA1. [Rose and Baillie 1979; Zetka and Rose 1995; KR]
Strain (22)
RNASeq_FPKM (74)
GO_annotation00091998
00091999
00092000
OrthologchrI_pilon.g113Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionrec-1 affects the recombination frequency in the central gene cluster region of autosomes and has been shown to alter the distribution of genes on the genetic map of the X chromosome, also affects X-chromosome nondisjunction; does not appear to act pre-meiotically.Paper_evidenceWBPaper00001046
WBPaper00002339
WBPaper00017219
Curator_confirmed (2)
Date_last_updated29 Sep 2015 00:00:00
Automated_descriptionInvolved in meiotic DNA double-strand break formation involved in reciprocal meiotic recombination.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY18H1A.7a
Y18H1A.7b
Corresponding_CDS_historyY18H1A.7:wp96
Corresponding_transcriptY18H1A.7a.1
Y18H1A.7b.1
Associated_featureWBsf648913
WBsf982561
WBsf1009119
WBsf218932
Experimental_infoRNAi_resultWBRNAi00055631Inferred_automaticallyRNAi_primary
WBRNAi00084348Inferred_automaticallyRNAi_primary
WBRNAi00103863Inferred_automaticallyRNAi_primary
Expr_patternExpr1028467
Expr1039252
Expr1159145
Expr2015290
Expr2033524
Drives_constructWBCnstr00020890
WBCnstr00020891
WBCnstr00020892
Construct_productWBCnstr00020890
WBCnstr00020892
Microarray_results (14)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037946:LIN-39_interacting
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040560:hpl-2_embryo_downregulated
WBPaper00041506:P1_enriched
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053810:sod-2(ok1030)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060100:SiNP_upregulated_mRNA
WBPaper00060661:sensory-neuron_depleted
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061340:g2
WBPaper00061340:Germline
WBPaper00061340:Parent_of_hyp3_ILsoDx
WBPaper00061340:Parent_of_K_Kprime
WBPaper00062056:dpl-1(n2994)_downregulated
WBPaper00062056:lin-35(n745)_downregulated
WBPaper00062056:lin-37(n758)_downregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066085:sin-3(syb2172)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_1
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00040210:Diazinon_24C_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00044013:nasp-1_downregulated
[cgc6390]:Cluster_F
[cgc6390]:intrinsic
WBProcessWBbiopr:00000109
Map_infoMapIPosition-18.5556
Well_ordered
PositiveInside_rearreDf24
Positive_cloneY18H1AInferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataPos_neg_data8939
8940
8941
8942
8943
ReferenceWBPaper00000321
WBPaper00000565
WBPaper00001046
WBPaper00001308
WBPaper00001330
WBPaper00001663
WBPaper00002339
WBPaper00003293
WBPaper00013930
WBPaper00014739
WBPaper00016246
WBPaper00016294
WBPaper00016386
WBPaper00016442
WBPaper00016466
WBPaper00017219
WBPaper00017245
WBPaper00017416
WBPaper00021696
WBPaper00023755
WBPaper00027942
WBPaper00032296
WBPaper00047420
WBPaper00047919
WBPaper00048558
WBPaper00060105
WBPaper00063123
WBPaper00066242
MethodGene