WormBase Tree Display for Gene: WBGene00017650

WBGene00017650 SMap: S_parent: Sequence: F21A9
  Identity: Version: 1
    Name: Sequence_name: F21A9.1
      Molecular_name: F21A9.1a
        F21A9.1a.1
        CE40304
        F21A9.1b
        CE52870
        F21A9.1a.2
        F21A9.1b.1
      Other_name: CELE_F21A9.1 Accession_evidence: NDB BX284601
      Public_name: F21A9.1
    DB_info: Database: AceView gene 1E279
        WormQTL gene WBGene00017650
        WormFlux gene WBGene00017650
        NDB locus_tag CELE_F21A9.1
        NCBI gene 184755
        RefSeq protein NM_001368612.3
            NM_001393244.1
        TrEMBL UniProtAcc O01528
            A0A3P6NNM4
        UniProt_GCRP UniProtAcc A0A3P6NNM4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (57)
    RNASeq_FPKM (74)
    Ortholog: WBGene00135055 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00033033 Caenorhabditis briggsae From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00033034 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00062312 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00143404 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      CBOVI.g10396 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g4295 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6915 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1886 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16103 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13423 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g324 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9831 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16447 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00042.g2312 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-F21A9.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00111.g4603 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08195 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002197 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_10158200 Caenorhabditis inopinata From_analysis: WormBase-Compara
    Paralog: WBGene00015764 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00044203 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in FLP; anterior hypodermis; interfacial epithelial cell; and intestine based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-12; and rrf-3 based on microarray and RNA-seq studies. Is affected by ten chemicals including 1-methylnicotinamide; multi-walled carbon nanotube; and stavudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F21A9.1a
      F21A9.1b
    Corresponding_CDS_history: F21A9.1:wp102
      F21A9.1:wp160
    Corresponding_transcript: F21A9.1a.1
      F21A9.1a.2
      F21A9.1b.1
    Associated_feature: WBsf656126
      WBsf983206
      WBsf983207
      WBsf1009541
      WBsf1009542
      WBsf217421
      WBsf217422
  Experimental_info: RNAi_result: WBRNAi00031201 Inferred_automatically: RNAi_primary
      WBRNAi00045167 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016063
      Expr1149105
      Expr2002806
      Expr2021023
    Drives_construct: WBCnstr00027131
    Construct_product: WBCnstr00027131
    Microarray_results (19)
    Expression_cluster: WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045861:set-2(ok952)_upregulated
      WBPaper00046121:mesoderm_unique
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055648:male-vas-deferens_expressed
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADEsh
      WBPaper00061340:B_F_K_Kp_U_Y
      WBPaper00061340:FLP
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061527:srj-42-srw-113
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:5_0
      WBPaper00065841:5_1
      WBPaper00065841:14_0
      WBPaper00065841:14_2
      WBPaper00065841:79_2
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00026980:intestine_enriched
      WBPaper00036130:mir-243_up_regulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00055899:2,4-Dinitroanisole_regulated
    Interaction: WBInteraction000249199
      WBInteraction000356708
  Map_info: Positive: Positive_clone: F21A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I -2.84612
  Method: Gene