WormBase Tree Display for Gene: WBGene00016642

WBGene00016642 SMap: S_parent: Sequence: C44C1
  Identity: Version: 2
    Name: CGC_name: chil-10 Person_evidence: WBPerson261
      Sequence_name: C44C1.2
      Molecular_name: C44C1.2
        C44C1.2.1
        CE30126
        C44C1.2.2
      Other_name: CELE_C44C1.2 Accession_evidence: NDB BX284606
      Public_name: chil-10
    DB_info: Database: AceView gene XB577
        WormQTL gene WBGene00016642
        WormFlux gene WBGene00016642
        NDB locus_tag CELE_C44C1.2
        Panther gene CAEEL|WormBase=WBGene00016642|UniProtKB=Q18607
          family PTHR46066
        NCBI gene 180447
        RefSeq protein NM_075784.8
        TREEFAM TREEFAM_ID TF319271
        TrEMBL UniProtAcc Q18607
        UniProt_GCRP UniProtAcc Q18607
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Jan 2013 14:30:54 WBPerson2970 Name_change: CGC_name: chil-10
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: chil
    Allele (43)
    Strain: WBStrain00002889
    RNASeq_FPKM (74)
    GO_annotation: 00061819
      00061820
      00122215
    Contained_in_operon: CEOPX012
    Ortholog: WBGene00060197 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029946 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164836 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00120707 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00231000 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11713 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g4990 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12173 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10938 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6780 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6289 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6150 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g53 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19044 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2675 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cang_2012_03_13_00071.g3366 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00403.g10367 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-chil-10 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold412.g1099 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00225.g7459 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01404 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15935 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0013310 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18357 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00249377 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258860 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292959 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296698 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296700 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296944 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296945 Trichuris muris From_analysis: WormBase-Compara
      WBGene00300943 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0031996 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-9169 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:28474 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915288 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308955 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (33)
    Structured_description: Automated_description: Predicted to enable oligosaccharide binding activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in endomembrane system. Expressed in head. Is an ortholog of human CHID1 (chitinase domain containing 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C44C1.2
    Corresponding_transcript: C44C1.2.1
      C44C1.2.2
    Other_sequence: Tcol_isotig10351
      Tcol_isotig14216
      CJC12149_1
      CBC02146_1
    Associated_feature: WBsf034313
      WBsf235300
  Experimental_info: RNAi_result: WBRNAi00029794 Inferred_automatically: RNAi_primary
      WBRNAi00090678 Inferred_automatically: RNAi_primary
      WBRNAi00011923 Inferred_automatically: RNAi_primary
      WBRNAi00042441 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1828
      Expr5497
      Expr1012586
      Expr1037155
      Expr1146431
      Expr2009970
      Expr2028210
    Drives_construct: WBCnstr00003408
      WBCnstr00027919
    Construct_product: WBCnstr00027919
    Microarray_results (20)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045521:Oogenic
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053615:SMO-1_target
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:F08G12.1_2283-cst-1_319
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_23
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026980:intestine_enriched
      WBPaper00032165:A_to_C_transit_increased
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_D
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_B
    Interaction: WBInteraction000552067
      WBInteraction000573837
  Map_info: Map: X Position: -18.8858
    Positive: Positive_clone: C44C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00036306
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene