WormBase Tree Display for Gene: WBGene00016549

WBGene00016549 SMap: S_parent: Sequence: C40A11
  Identity: Version: 1
    Name: Sequence_name: C40A11.6
      Molecular_name: C40A11.6
        C40A11.6.1
        CE27840
      Other_name: CELE_C40A11.6 Accession_evidence: NDB BX284602
      Public_name: C40A11.6
    DB_info: Database: AceView gene 2C434
        WormQTL gene WBGene00016549
        WormFlux gene WBGene00016549
        NDB locus_tag CELE_C40A11.6
        Panther gene CAEEL|WormBase=WBGene00016549|UniProtKB=Q9TZA8
          family PTHR11145
        NCBI gene 173572
        RefSeq protein NM_061796.4
        TREEFAM TREEFAM_ID TF315649
        TrEMBL UniProtAcc Q9TZA8
        UniProt_GCRP UniProtAcc Q9TZA8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (82)
    RNASeq_FPKM (74)
    GO_annotation: 00122140
    Ortholog: WBGene00060792 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00036112 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00038825 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
      WBGene00145322 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      WBGene00060793 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00064689 Caenorhabditis remanei From_analysis: Inparanoid_8
      WBGene00118399 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00161644 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00023523 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00223310 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g19907 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      Cnig_chr_III.g11420 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold581.g4592 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02408.g26345 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_007409 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_007492 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrII_pilon.g3596 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00060761 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00244387 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00281604 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00292950 Trichuris muris From_analysis: WormBase-Compara
      WBGene00296693 Trichuris muris From_analysis: WormBase-Compara
      WBGene00297399 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0033017 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-030131-5610 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-2843 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-060825-162 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:11894 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      MGI:1923739 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      MGI:2141207 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:3877 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      RGD:1591979 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
    Paralog (31)
    Structured_description: Automated_description: Predicted to be involved in protein homooligomerization. Is an ortholog of human TNFAIP1 (TNF alpha induced protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C40A11.6
    Corresponding_transcript: C40A11.6.1
    Associated_feature: WBsf649915
      WBsf655336
      WBsf655351
      WBsf986886
      WBsf1011677
      WBsf222747
  Experimental_info: RNAi_result: WBRNAi00011807 Inferred_automatically: RNAi_primary
      WBRNAi00042244 Inferred_automatically: RNAi_primary
      WBRNAi00011808 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023465
      Expr1037095
      Expr1146236
      Expr2001550
      Expr2019771
    Drives_construct: WBCnstr00027983
    Construct_product: WBCnstr00027983
    Microarray_results (20)
    Expression_cluster: WBPaper00024505:pharyngeal_enriched
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049954:BPS_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050561:indole_10-fold_downregulated
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051352:Long-Term-Association-Memory_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:embryo-to-L1_downregulated_WT_SMARTseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053664:ins-11(tm1053)_upregulated
      WBPaper00053814:15C_downregulated_OP50
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056619:CEPsh_enriched
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059477:hlh-2(RNAi)_regulated
      WBPaper00059598:HeatShock_downregulated
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060921:tdc-1(n3419)_downregulated
      WBPaper00061203:let-418(n3536)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:ADF_AWB
      WBPaper00061340:ADL_parent
      WBPaper00061340:AIN_parent
      WBPaper00061340:ALA
      WBPaper00061340:ASE_parent
      WBPaper00061340:ASG_AWA
      WBPaper00061340:ASI_parent
      WBPaper00061340:ASK_parent
      WBPaper00061340:AVH_parent
      WBPaper00061340:DVC_parent
      WBPaper00061340:g1A_parent
      WBPaper00061340:g2_parent
      WBPaper00061340:GLR
      WBPaper00061340:I1_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:M1_parent
      WBPaper00061340:M4_parent
      WBPaper00061340:Neuroblast_ADE_ADA
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AIZ_FLP
      WBPaper00061340:Neuroblast_ALA_RMED
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_ASJ_AUA
      WBPaper00061340:Neuroblast_AVG_RIR
      WBPaper00061340:Neuroblast_AWC_SAAVx
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061340:Neuroblast_M2_M3
      WBPaper00061340:Neuroblast_PVC_LUA
      WBPaper00061340:NSM_parent
      WBPaper00061340:Parent_of_exc_gland_AVK
      WBPaper00061340:Parent_of_g1P_I3
      WBPaper00061340:Parent_of_MI_pm1DR
      WBPaper00061340:Pharyngeal_neuron
      WBPaper00061340:RIA_parent
      WBPaper00061340:RIC_parent
      WBPaper00061340:RID
      WBPaper00061340:RID_parent
      WBPaper00061340:RIM_parent
      WBPaper00061340:RMED
      WBPaper00061340:RME_LR_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061527:dsh-1_3575-C40A11.4
      WBPaper00061527:ZK1053.4-C08F1.6
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062184:PA14_downregulated
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065877:rege-1(imm070)_upregulated_OP50
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066204:CdCl2_downregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_downregulated_WT
      cgc4489_group_9
      WBPaper00025032:cluster_5
      WBPaper00025032:cluster_23
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_F
      WBPaper00036383:ash-2_Day8_regulated
      WBPaper00040116:pRJ-FR.5_up_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_E
    Interaction (168)
  Map_info: Positive: Positive_clone: C40A11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -13.8437
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene