WormBase Tree Display for Gene: WBGene00016513

WBGene00016513 SMap: S_parent: Sequence: C38C3
  Identity: Version: 1
    Name: Sequence_name: C38C3.4
      Molecular_name: C38C3.4b
        C38C3.4a
        CE50916
        C38C3.4b.1
      Other_name: CELE_C38C3.4 Accession_evidence: NDB BX284605
      Public_name: C38C3.4
    DB_info: Database (14)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (52)
    RNASeq_FPKM (74)
    GO_annotation: 00082467
      00082468
      00082469
      00082470
      00082471
      00122110
      00122111
      00122112
    Ortholog: WBGene00053126 Caenorhabditis remanei From_analysis (4)
      WBGene00028832 Caenorhabditis briggsae From_analysis (4)
      WBGene00154651 Caenorhabditis brenneri From_analysis (4)
      WBGene00121790 Caenorhabditis japonica From_analysis (3)
      WBGene00222916 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12027 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5967 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5195 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18745 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26013 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7046 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15965 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20994 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24082 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00477.g11304 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-C38C3.4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11439 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00729.g14895 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_08362 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_019006 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05267 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3848 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50046100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g13232 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00208459 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00243468 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00205534 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00294640 Trichuris muris From_analysis: WormBase-Compara
      WBGene00295052 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0039908 Drosophila melanogaster From_analysis (3)
      ZFIN:ZDB-GENE-030131-8246 Danio rerio From_analysis (3)
      ZFIN:ZDB-GENE-100609-5 Danio rerio From_analysis (3)
      ZFIN:ZDB-GENE-120928-3 Danio rerio From_analysis (3)
      ZFIN:ZDB-GENE-100609-4 Danio rerio From_analysis (3)
      HGNC:19140 Homo sapiens From_analysis (3)
      HGNC:19141 Homo sapiens From_analysis (3)
      MGI:2147036 Mus musculus From_analysis (3)
      MGI:2155779 Mus musculus From_analysis (3)
      RGD:1311661 Rattus norvegicus From_analysis (3)
      RGD:1559518 Rattus norvegicus From_analysis (3)
    Paralog (93)
    Structured_description: Automated_description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in signal transduction. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 11. Is an ortholog of human TTBK1 (tau tubulin kinase 1) and TTBK2 (tau tubulin kinase 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0050961 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:19141)
  Molecular_info: Corresponding_CDS: C38C3.4b
    Corresponding_CDS_history: C38C3.4a:wp249
      C38C3.4b:wp249
    Corresponding_transcript: C38C3.4a
      C38C3.4b.1
    Other_sequence (22)
    Associated_feature: WBsf999338
      WBsf1019185
  Experimental_info: RNAi_result: WBRNAi00011743 Inferred_automatically: RNAi_primary
      WBRNAi00070636 Inferred_automatically: RNAi_primary
      WBRNAi00070638 Inferred_automatically: RNAi_primary
      WBRNAi00042140 Inferred_automatically: RNAi_primary
      WBRNAi00029653 Inferred_automatically: RNAi_primary
      WBRNAi00070637 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027203
      Expr1146142
      Expr2001509
      Expr2019731
    Microarray_results (26)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044037:eat-2_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(+)
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050053:muscle_enriched_Day12
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:GABAergic-neuron_enriched
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053664:ins-11(tm1053)_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055897:heat-shock_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056218:daf-16(mu86)_upregulated_Day7
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057006:DietaryRestriction_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061274:microgravity_downregulated
      WBPaper00061340:pm3_pm4_pm5
      WBPaper00061340:RIM
      WBPaper00061527:C32F10.4-D1086.2
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064871:hypoxia_downregulated_F1
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065086:N2_N.ausubeli_regulated
      WBPaper00065841:4_0
      WBPaper00065841:4_1
      WBPaper00065841:4_2
      WBPaper00065841:7_0
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:24_0
      WBPaper00065841:24_1
      WBPaper00065841:26_0
      WBPaper00065841:26_1
      WBPaper00065841:26_2
      WBPaper00065841:38_0
      WBPaper00065841:38_2
      WBPaper00065841:143_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_12
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00032948:StarveUp2
      WBPaper00034739:N2moreDR1350
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_I
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00039851:Live_C_albicans_vs_HK_OP50
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041207:CE_dauer_up
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5376]:let-60(G12V)-regulated_genes
    Interaction (157)
  Map_info: Positive: Positive_clone: C38C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -18.8608
  Reference: WBPaper00027258
  Method: Gene