WormBase Tree Display for Gene: WBGene00013807

WBGene00013807 SMap: S_parent: Sequence: Y116A8C
  Identity: Version: 1
    Name: Sequence_name: Y116A8C.30
      Molecular_name: Y116A8C.30a
        Y116A8C.30a.1
        CE27453
        Y116A8C.30c
        CE45753
        Y116A8C.30b
        Y116A8C.30c.1
      Other_name: CELE_Y116A8C.30 Accession_evidence: NDB BX284604
      Public_name: Y116A8C.30
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (83)
    RNASeq_FPKM (74)
    GO_annotation: 00008414
      00008415
      00120583
      00120584
    Contained_in_operon: CEOP4596
    Ortholog: WBGene00023812 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00069545 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142985 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00217219 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00103294 Pristionchus pacificus From_analysis: OMA
      CBOVI.g11025 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5830 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20380 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9159 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g11415 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g26879 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9313 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5272 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9749 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11492 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00045.g2443 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g11988 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold70.g433 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00306.g9109 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19520 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22908 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011964 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10447 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13887 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40218900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12826 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209331 Caenorhabditis japonica From_analysis: WormBase-Compara
      FB:FBgn0263051 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040808-28 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      HGNC:28086 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      MGI:1922847 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
      RGD:1560158 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            OrthoFinder
            Panther
    Structured_description: Automated_description: Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 10. Is an ortholog of human NDUFAF2 (NADH:ubiquinone oxidoreductase complex assembly factor 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0112075 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:28086)
  Molecular_info: Corresponding_CDS: Y116A8C.30a
      Y116A8C.30c
    Corresponding_CDS_history: Y116A8C.30:wp49
    Corresponding_transcript: Y116A8C.30b
      Y116A8C.30a.1
      Y116A8C.30c.1
    Other_sequence: EX915242.1
      CJC12305_1
      EX915270.1
      Hbac_isotig04580
      HBC16326_1
      Dviv_isotig33253
      JI467837.1
      ES414285.1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00055448 Inferred_automatically: RNAi_primary
      WBRNAi00033573 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026425
      Expr1036182
      Expr1158960
      Expr2007049
      Expr2025276
    Microarray_results (21)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035073:mitochondria_protein
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045380:cep-1(gk138)_upregulated_normal
      WBPaper00045380:cep-1(gk138)_upregulated_UV
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049290:rsks-1(sv31)_upregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00061527:Y32B12B.2-F28C1.1
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00065005:sams-4(RNAi)_downregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:sek-1(km4)_upregulated_Ref
      cgc4489_group_17
      WBPaper00025032:cluster_152
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031477:Down_deps-1_vs_WT
      WBPaper00035560:ahr-1_downregulated
      WBPaper00036286:Pattern_G
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00037147:heatshock_upregulated
      WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
      WBPaper00040210:Chlorpyrifos_16C_regulated
      WBPaper00040426:CYD-1_CDK-4_downregulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00048637:lin-35(n745)_starvation_downregulated
    Interaction (15)
  Map_info: Positive: Positive_clone: Y116A8C Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV 16.1486
  Reference: WBPaper00031295
    WBPaper00038491
    WBPaper00055090
  Method: Gene