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WormBase Tree Display for Gene: WBGene00018762

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Name Class

WBGene00018762SMapS_parentSequenceF53E10
IdentityVersion1
NameSequence_nameF53E10.6
Molecular_nameF53E10.6
F53E10.6.1
CE10930
Other_nameCELE_F53E10.6Accession_evidenceNDBBX284605
Public_nameF53E10.6
DB_infoDatabaseAceViewgene5D80
WormQTLgeneWBGene00018762
WormFluxgeneWBGene00018762
NDBlocus_tagCELE_F53E10.6
PanthergeneCAEEL|WormBase=WBGene00018762|UniProtKB=P91318
familyPTHR13245
NCBIgene178728
RefSeqproteinNM_071312.4
SwissProtUniProtAccP91318
TREEFAMTREEFAM_IDTF106119
UniProt_GCRPUniProtAccP91318
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (48)
RNASeq_FPKM (74)
GO_annotation00050597
00050598
00050599
00123790
Ortholog (31)
Structured_descriptionAutomated_descriptionPredicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Expressed in several structures, including body wall musculature and gonad. Is an ortholog of human RRP15 (ribosomal RNA processing 15 homolog).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF53E10.6
Corresponding_transcriptF53E10.6.1
Other_sequenceCRC04728_1
CR08627
Acan_isotig14017
CJC15923_1
CR08626
Associated_featureWBsf652508
WBsf999514
WBsf999515
WBsf999516
WBsf999517
WBsf1019300
WBsf1019301
WBsf233422
Experimental_infoRNAi_resultWBRNAi00075880Inferred_automaticallyRNAi_primary
WBRNAi00008834Inferred_automaticallyRNAi_primary
WBRNAi00061681Inferred_automaticallyRNAi_primary
WBRNAi00048125Inferred_automaticallyRNAi_primary
WBRNAi00025587Inferred_automaticallyRNAi_primary
WBRNAi00033509Inferred_automaticallyRNAi_primary
Expr_patternExpr13601
Expr1029028
Expr1038083
Expr1151934
Expr2004061
Expr2022285
Drives_constructWBCnstr00026287
Construct_productWBCnstr00026287
Microarray_results (18)
Expression_clusterWBPaper00032097:CGH-1-associated-mRNA
WBPaper00032425:up_in_lin-35
WBPaper00032425:up_in_rde-4
WBPaper00032425:up_in_zfp-1
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:nucleus_specific
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:stavudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061466:nath-10(icb99)_downregulated
WBPaper00061527:B0491.7-Y54E10A.10
WBPaper00061692:acivicin_downregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064315:mes-3(bn199)_downregulated_PGCs
WBPaper00064315:mes-4(bn73)_downregulated_PGCs
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_4
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_30
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032948:FedUp
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_H
WBPaper00037611:GLD-2-associated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
InteractionWBInteraction000042860
WBInteraction000141303
WBInteraction000147006
WBInteraction000184072
WBInteraction000185448
WBInteraction000190242
WBInteraction000194167
WBInteraction000199839
WBInteraction000213860
WBInteraction000228557
WBInteraction000256181
WBInteraction000270711
WBInteraction000294230
WBInteraction000304649
WBInteraction000313492
WBInteraction000335038
WBInteraction000355383
WBInteraction000366516
WBInteraction000371018
WBInteraction000376584
WBInteraction000381911
WBInteraction000385094
WBInteraction000405110
WBInteraction000410692
WBInteraction000411387
WBInteraction000418795
WBInteraction000422987
WBInteraction000425044
WBInteraction000548259
WBInteraction000549785
WBInteraction000555340
WBInteraction000576651
Map_infoPositivePositive_cloneF53E10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-13.7328
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00060275
MethodGene