WormBase Tree Display for Gene: WBGene00017238

WBGene00017238 SMap: S_parent: Sequence: F08B4
  Identity: Version: 2
    Name: CGC_name: snrp-3
      Sequence_name: F08B4.7
      Molecular_name: F08B4.7
        F08B4.7.1
        CE09232
      Other_name: CELE_F08B4.7 Accession_evidence: NDB BX284604
      Public_name: snrp-3
    DB_info: Database: AceView gene 4J452
        WormQTL gene WBGene00017238
        WormFlux gene WBGene00017238
        NDB locus_tag CELE_F08B4.7
        Panther gene CAEEL|WormBase=WBGene00017238|UniProtKB=P90815
          family PTHR31148
        NCBI gene 177674
        RefSeq protein NM_001383150.2
        SwissProt UniProtAcc P90815
        TREEFAM TREEFAM_ID TF313578
        UniProt_GCRP UniProtAcc P90815
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Mar 2021 09:37:10 WBPerson1983 Name_change: CGC_name: snrp-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snrp
    Allele (25)
    RNASeq_FPKM (74)
    GO_annotation (21)
    Contained_in_operon: CEOP4296
    Ortholog (35)
    Structured_description: Automated_description: Predicted to enable pre-mRNA 5'-splice site binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in mixed connective tissue disease and systemic lupus erythematosus. Is an ortholog of human SNRPC (small nuclear ribonucleoprotein polypeptide C). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9074 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11157)
      DOID:65 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11157)
      DOID:3492 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11157)
  Molecular_info: Corresponding_CDS: F08B4.7
    Corresponding_transcript: F08B4.7.1
    Other_sequence (37)
    Associated_feature: WBsf652009
      WBsf230451
      WBsf230452
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1025925
      Expr1037400
      Expr1147946
      Expr2002281
      Expr2020500
    Drives_construct: WBCnstr00027463
    Construct_product: WBCnstr00027463
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_rde-4
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050225:flp-6(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:snr-6-lsm-3
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064130:Beta-Amyloid_downregulated_protein
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064502:spe-44(fx110)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_7
      WBPaper00025032:cluster_87
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031060:2-deoxy-D-glucose_downregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036123:Atrazine_regulated
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(53_min)
      [cgc5767]:expression_class_E_pi(41_min)
      [cgc5767]:expression_class_E_pi(53_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000034132
      WBInteraction000034248
      WBInteraction000034515
      WBInteraction000035142
      WBInteraction000035901
      WBInteraction000035967
      WBInteraction000035972
      WBInteraction000036511
      WBInteraction000036549
      WBInteraction000037081
      WBInteraction000037335
      WBInteraction000037338
      WBInteraction000037340
      WBInteraction000037688
      WBInteraction000037690
      WBInteraction000038187
      WBInteraction000038210
      WBInteraction000038457
      WBInteraction000038470
      WBInteraction000038589
      WBInteraction000040534
      WBInteraction000041481
      WBInteraction000041488
      WBInteraction000041489
      WBInteraction000041581
      WBInteraction000041585
      WBInteraction000042637
      WBInteraction000042649
      WBInteraction000042655
      WBInteraction000042701
      WBInteraction000043869
      WBInteraction000045034
      WBInteraction000045703
      WBInteraction000046615
      WBInteraction000046641
      WBInteraction000046649
      WBInteraction000046671
      WBInteraction000050168
      WBInteraction000136132
      WBInteraction000152355
      WBInteraction000158859
      WBInteraction000158877
      WBInteraction000159375
      WBInteraction000159376
      WBInteraction000159377
      WBInteraction000159378
      WBInteraction000159379
      WBInteraction000160318
      WBInteraction000166839
      WBInteraction000174418
      WBInteraction000174419
      WBInteraction000180811
      WBInteraction000252167
      WBInteraction000255935
      WBInteraction000286281
      WBInteraction000289025
      WBInteraction000295289
      WBInteraction000301043
      WBInteraction000321409
      WBInteraction000324537
      WBInteraction000326382
      WBInteraction000334235
      WBInteraction000335170
      WBInteraction000336670
      WBInteraction000340090
      WBInteraction000340499
      WBInteraction000342183
      WBInteraction000347521
      WBInteraction000351538
      WBInteraction000354444
      WBInteraction000361391
      WBInteraction000368739
      WBInteraction000376323
      WBInteraction000391234
      WBInteraction000397403
      WBInteraction000398789
      WBInteraction000402874
      WBInteraction000404603
      WBInteraction000404805
      WBInteraction000404879
      WBInteraction000409529
      WBInteraction000418975
      WBInteraction000420977
      WBInteraction000424475
      WBInteraction000437164
      WBInteraction000446908
      WBInteraction000447259
      WBInteraction000449043
      WBInteraction000449990
      WBInteraction000453871
      WBInteraction000455889
      WBInteraction000460718
      WBInteraction000462080
      WBInteraction000547700
      WBInteraction000547701
  Map_info: Map: IV Position: 3.93159
    Positive: Positive_clone: F08B4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene