WormBase Tree Display for Gene: WBGene00009287

WBGene00009287 SMap: S_parent: Sequence: F31C3
  Identity: Version: 2
    Name: CGC_name: psf-2 Person_evidence: WBPerson350
      Sequence_name: F31C3.5
      Molecular_name: F31C3.5
        F31C3.5.1
        CE17734
      Other_name: CELE_F31C3.5 Accession_evidence: NDB BX284601
      Public_name: psf-2
    DB_info: Database: AceView gene 1P647
        WormQTL gene WBGene00009287
        WormFlux gene WBGene00009287
        NDB locus_tag CELE_F31C3.5
        Panther gene CAEEL|WormBase=WBGene00009287|UniProtKB=O62193
          family PTHR12772
        NCBI gene 185146
        RefSeq protein NM_061226.3
        SwissProt UniProtAcc O62193
        TREEFAM TREEFAM_ID TF314359
        UniProt_GCRP UniProtAcc O62193
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Jul 2013 14:23:12 WBPerson2970 Name_change: CGC_name: psf-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: psf
    Allele (36)
    Strain: WBStrain00051124
    RNASeq_FPKM (74)
    GO_annotation: 00037271
      00037272
      00037273
      00037274
      00037275
      00037276
      00037277
      00037278
      00117025
      00117026
    Ortholog (34)
    Structured_description: Automated_description: Predicted to be involved in double-strand break repair via break-induced replication. Predicted to be located in nuclear chromosome. Predicted to be part of GINS complex. Is an ortholog of human GINS2 (GINS complex subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F31C3.5
    Corresponding_transcript: F31C3.5.1
    Other_sequence (28)
    Associated_feature: WBsf643881
      WBsf218857
  Experimental_info: RNAi_result: WBRNAi00045997 Inferred_automatically: RNAi_primary
      WBRNAi00031611 Inferred_automatically: RNAi_primary
      WBRNAi00081363 Inferred_automatically: RNAi_primary
      WBRNAi00071089 Inferred_automatically: RNAi_primary
      WBRNAi00000040 Inferred_automatically: RNAi_primary
      WBRNAi00025337 Inferred_automatically: RNAi_primary
      WBRNAi00116678 Inferred_automatically: RNAi_primary
      WBRNAi00025338 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020907
      Expr1034054
      Expr1149896
      Expr2015133
      Expr2033371
    Drives_construct: WBCnstr00032311
    Construct_product: WBCnstr00032311
    Antibody: WBAntibody00002866
      WBAntibody00002988
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032425:up_in_lin-35
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:germline-precursors_embryo_enriched
      WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038168:lin-35_upregulated
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042561:smg-2(RNAi)_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045521:Oogenic
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048923:Aging_regulated
      WBPaper00049290:rsks-1(sv31)_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00054758:alg-1(gk204)_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059490:dcr-1(m9375)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061274:hypergravity_10xg_upregulated
      WBPaper00061340:I2_grandparent
      WBPaper00061340:Neuroblast_AIZ_FLP_RMG
      WBPaper00061340:Neuroblast_ASH_RIB
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061527:F54E7.8-orc-5_6376
      WBPaper00062056:dpl-1(n2994)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:lin-36(we31)_upregulated
      WBPaper00062056:lin-36(we36)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062672:let-418(n3536)_downregulated
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
      WBPaper00064005:starvation_downregulated_N2_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065005:sams-4(RNAi)_downregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066085:sin-3(syb2172)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_2
      cgc4489_group_12
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Depleted
      WBPaper00032165:A_to_C_transit_decreased
      WBPaper00035873:dpy-10_regulated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_H
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00040426:CYE-1_CDK-2AF_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042128:gei-8(ok1671)_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(53_min)
      [cgc5767]:expression_class_ME
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
    Interaction: WBInteraction000028901
      WBInteraction000035542
      WBInteraction000035543
      WBInteraction000036267
      WBInteraction000036644
      WBInteraction000120093
      WBInteraction000135025
      WBInteraction000135105
      WBInteraction000135106
      WBInteraction000135107
      WBInteraction000135108
      WBInteraction000135109
      WBInteraction000135110
      WBInteraction000186660
      WBInteraction000193222
      WBInteraction000204337
      WBInteraction000222037
      WBInteraction000226159
      WBInteraction000277737
      WBInteraction000318207
      WBInteraction000330255
      WBInteraction000353523
      WBInteraction000359728
      WBInteraction000363456
      WBInteraction000367710
      WBInteraction000378782
      WBInteraction000379176
      WBInteraction000414990
      WBInteraction000446800
      WBInteraction000451631
      WBInteraction000523333
      WBInteraction000560684
      WBInteraction000576785
      WBInteraction000576789
  Map_info: Map: I Position: 29.8762
    Positive: Positive_clone: F31C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040279
    WBPaper00045289
    WBPaper00048493
    WBPaper00055090
    WBPaper00063040
    WBPaper00064339
    WBPaper00066002
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene