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WormBase Tree Display for Gene: WBGene00009030

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Name Class

WBGene00009030SMapS_parentSequenceF21H7
IdentityVersion2
NameCGC_nameclec-233Person_evidenceWBPerson2531
Sequence_nameF21H7.4
Molecular_nameF21H7.4
F21H7.4.1
CE15876
Other_nameCELE_F21H7.4Accession_evidenceNDBBX284605
Public_nameclec-233
DB_infoDatabaseAceViewgene5Q715
WormQTLgeneWBGene00009030
WormFluxgeneWBGene00009030
NDBlocus_tagCELE_F21H7.4
PanthergeneCAEEL|WormBase=WBGene00009030|UniProtKB=O45388
familyPTHR47517
NCBIgene180089
RefSeqproteinNM_074696.5
TREEFAMTREEFAM_IDTF315870
TrEMBLUniProtAccO45388
UniProt_GCRPUniProtAccO45388
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
209 Oct 2007 15:40:27WBPerson2970Name_changeCGC_nameclec-233
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (68)
RNASeq_FPKM (74)
Ortholog (46)
Paralog (126)
Structured_descriptionAutomated_descriptionEnriched in several structures, including germ line; head mesodermal cell; muscle cell; pharyngeal-intestinal valve cell; and rectal gland cell based on proteomic; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; glp-1; and hsf-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including manganese chloride; stavudine; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; and C-type lectin fold.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF21H7.4
Corresponding_transcriptF21H7.4.1
Other_sequenceCSC02137_1
FD515894.1
CR05103
CRC02006_1
Associated_featureWBsf655139
WBsf662144
WBsf662145
WBsf662146
WBsf233087
Experimental_infoRNAi_resultWBRNAi00112635Inferred_automaticallyRNAi_primary
WBRNAi00045257Inferred_automaticallyRNAi_primary
WBRNAi00008678Inferred_automaticallyRNAi_primary
Expr_patternExpr4945
Expr1010419
Expr1033937
Expr1149188
Expr2010139
Expr2028380
Drives_constructWBCnstr00012358
WBCnstr00032511
Construct_productWBCnstr00032511
Microarray_results (16)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00041071:spe-44_downregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048611:MnCl2_upregulated
WBPaper00049498:npr-1(ur89)_regulated_2
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_enriched
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053599:female_vs_male_downregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053909:N2_vs_CB4856_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055971:nhl-2(ok818)_20C_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056284:ints-6(t1903)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00059987:Wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_downregulated_L4
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060921:cat-2(e1112)_downregulated
WBPaper00060921:tbh-1(ok1196)_downregulated
WBPaper00060921:tph-1(mg280)_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:BWM_anterior
WBPaper00061340:BWM_far_posterior
WBPaper00061340:mu_int_mu_anal
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061357:mett-10(ok2204)_downregulated_OP50
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:mtd-1-mec-18
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061651:Rectal_gland_enriched
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062167:mbl-1(tm1563)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062534:fat-P-80_upregulated_ech-6(RNAi)
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064728:cpl-1(W32AY35A)_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065841:30_0
WBPaper00065841:30_3
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_14
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00035892:KIM5_vs_OP50_Up
WBPaper00035892:Y.pestis_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:TA300_up
WBPaper00040998:nhr-80_regulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00045673:colistin_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc6390]:male_soma-enriched
InteractionWBInteraction000113788
WBInteraction000113834
WBInteraction000113880
WBInteraction000113929
WBInteraction000113980
WBInteraction000113981
WBInteraction000113982
WBInteraction000114059
WBInteraction000116402
WBInteraction000116447
WBInteraction000116490
WBInteraction000116532
WBInteraction000116574
WBInteraction000116575
WBInteraction000116576
WBInteraction000116577
WBInteraction000116578
WBInteraction000116579
WBInteraction000116580
WBInteraction000116581
WBInteraction000116582
WBInteraction000116583
WBInteraction000116584
WBInteraction000116585
WBInteraction000116586
WBInteraction000116587
WBInteraction000116588
WBInteraction000116589
WBInteraction000116590
WBInteraction000116591
WBInteraction000116592
WBInteraction000116593
WBInteraction000116594
WBInteraction000116595
WBInteraction000116596
WBInteraction000116597
WBInteraction000116598
WBInteraction000116599
WBInteraction000116600
WBInteraction000116601
WBInteraction000116602
WBInteraction000116603
WBInteraction000116604
WBInteraction000116605
WBInteraction000116606
WBInteraction000116607
WBInteraction000116608
WBInteraction000116609
WBInteraction000116610
WBInteraction000116611
WBInteraction000116612
WBInteraction000116613
WBInteraction000116614
WBInteraction000123179
WBInteraction000152832
WBInteraction000159123
WBInteraction000159124
WBInteraction000166709
WBInteraction000169892
WBInteraction000173062
WBInteraction000336335
WBInteraction000336415
WBInteraction000564497
Map_infoMapVPosition9.85735Error0.001091
PositivePositive_cloneF21H7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031003
WBPaper00031686
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene