WormBase Tree Display for Gene: WBGene00018239

WBGene00018239 SMap: S_parent: Sequence: F40G9
  Identity: Version: 2
    Name: CGC_name: sec-20 Person_evidence: WBPerson3132
      Sequence_name: F40G9.1
      Molecular_name: F40G9.1
        F40G9.1.1
        CE43608
      Other_name: CELE_F40G9.1 Accession_evidence: NDB BX284603
      Public_name: sec-20
    DB_info: Database: AceView gene 3A811
        WormQTL gene WBGene00018239
        WormFlux gene WBGene00018239
        NDB locus_tag CELE_F40G9.1
        Panther gene CAEEL|WormBase=WBGene00018239|UniProtKB=C0Z1Y7
          family PTHR12825
        NCBI gene 175187
        RefSeq protein NM_064775.5
        TREEFAM TREEFAM_ID TF324339
        TrEMBL UniProtAcc C0Z1Y7
        UniProt_GCRP UniProtAcc C0Z1Y7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Mar 2010 11:10:22 WBPerson2970 Name_change: CGC_name: sec-20
      Split_into: WBGene00185078
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sec
    Allele (74)
    RNASeq_FPKM (74)
    GO_annotation: 00006708
      00006709
      00006710
      00006711
      00006712
      00006713
      00006714
      00006715
      00006716
      00123422
      00123423
    Contained_in_operon: CEOP3016
    Ortholog (26)
    Structured_description: Automated_description: Predicted to enable SNAP receptor activity. Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in Down syndrome. Is an ortholog of human BNIP1 (BCL2 interacting protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:14250 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:1082)
  Molecular_info: Corresponding_CDS: F40G9.1
    Corresponding_CDS_history: F40G9.1:wp201
    Corresponding_transcript: F40G9.1.1
    Other_sequence: Dviv_isotig10838
    Associated_feature: WBsf644907
      WBsf224348
  Experimental_info: RNAi_result (16)
    Expr_pattern: Expr1015175
      Expr1037855
      Expr1150770
      Expr2015711
      Expr2033943
    Microarray_results: SMD_F40G9.1
      GPL14144_F40G9.1_440-499_0.928_3_C
      GPL14144_F40G9.1_502-561_0.914_8_B
      GPL14144_F40G9.1_631-690_0.939_1_A
      GPL19516_CGZ0020886
      GPL21109_F40G9.1
      GPL8673_F40G9_1P00456
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049177:rpn-10(ok1865)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:rect_D
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062590:Aging_upregulated_coelomocyte
      WBPaper00064716:paraquat_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_transcript
      WBPaper00065945:global-rpoa-2(-)_upregulated_transcript
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026980:intestine_enriched
    Interaction (50)
  Map_info: Map: III Position: -26.918 Error: 0.001579
    Positive: Positive_clone: F40G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene