WormBase Tree Display for Gene: WBGene00004492

WBGene00004492 SMap: S_parent: Sequence: F28D1
  Identity: Version: 1
    Name: CGC_name: rps-23
      Sequence_name: F28D1.7
      Molecular_name: F28D1.7a
        F28D1.7a.1
        CE05747
        F28D1.7b
      Other_name: CELE_F28D1.7 Accession_evidence: NDB BX284604
      Public_name: rps-23
    DB_info: Database: AceView gene 4N154
        WormQTL gene WBGene00004492
        WormFlux gene WBGene00004492
        NDB locus_tag CELE_F28D1.7
        Panther gene CAEEL|WormBase=WBGene00004492|UniProtKB=Q19877
          family PTHR11652
        NCBI gene 178188
        RefSeq protein NR_131618.1
            NM_069964.9
        SwissProt UniProtAcc Q19877
        UniProt_GCRP UniProtAcc Q19877
        OMIM gene 603683
        RNAcentral URSid URS000077351A
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (18)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps23 using blastP
    Strain: WBStrain00001593
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (40)
    Paralog: WBGene00011391 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: rps-23 encodes a small ribosomal subunit S23 protein; by homology, RPS-23 is predicted to function in protein biosynthesis; in C. elegans, RPS-23 activity is required for germline development, vulval morphogenesis, and the overall health of the animal. Paper_evidence: WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit and polysomal ribosome. Human ortholog(s) of this gene implicated in brachycephaly, trichomegaly, and developmental delay. Is an ortholog of human RPS23 (ribosomal protein S23). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0070415 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10410)
  Molecular_info: Corresponding_CDS: F28D1.7a
    Corresponding_transcript: F28D1.7b
      F28D1.7a.1
    Other_sequence: SR03557
      MA00512
      HGC00367_1
      CBC12517_1
      Tcir_isotig06299
      Dviv_isotig10160
      ZPC00202_1
      FD515408.1
      RSC00184_1
      PP00469
      MAC02692_1
      HCC00664_1
      FG589366.1
      JI483274.1
      EX010814.1
      LSC01202_1
      XI00569
      FC809459.1
      HG10912
      FD516043.1
      ES413285.1
      Dviv_isotig10159
      HC02337
      CJC00004_1
      FC821881.1
      CJC15871_1
      GT571469.1
      AS13627
      AS03152
      XIC02800_1
      RS06309
      CB043810.1
      AAC00363_1
      Hbac_isotig05669
      ES409433.1
      CD455253.1
      FE912520.1
      TX01731
      PVC01229_1
      AI438728.1
      ES414114.1
      BU087904.1
      SS01552
      DN190759.1
      TM02390
      FG619533.1
      MJ04287
      CBC15607_1
      GO251573.1
      CK850305.1
      EV851357.1
      JK315171.1
      ES408764.1
      CK850531.1
      CK850785.1
      EX912102.1
      CB043555.1
      NAC01469_1
      FE920157.1
      TM02097
      MCC05214_1
      CGC00333_1
      RS06467
      OOC03106_1
      ES412679.1
      GO250932.1
      CK855019.1
      Tcir_isotig09264
      HC00257
      ES409905.1
      DIC01545_1
      MH02590
      GO252922.1
      EX008120.1
      MP00438
      ES742145.1
      HG10595
      Dviv_isotig10158
      TM01267
      HCC00664_2
      GR978993.1
      JO475108.1
      HCC01932_1
      Oden_isotig17930
      HCC06145_1
      Acan_isotig07314
      FE912139.1
      EX914039.1
      GR14616
      FE914015.1
      MJ02237
      AS06360
      AS04407
      SRC04505_1
      HC01232
      JI233218.1
      Tcir_isotig14201
      EX911536.1
      EX915770.1
      CD203637.1
      HG09958
      EX014691.1
      MPC00251_1
      ASC13695_1
      FC820841.1
      Tcir_isotig03304
      ES740020.1
      FC821267.1
      AW562126.1
      ACC03738_1
      ASC17406_1
      BMC00817_1
      CJC01604_1
      CBC00065_1
      CK850657.1
      DA04972
      AS02933
      FC821538.1
      EX014001.1
      FG589197.1
      BMC12361_1
      GPC01085_1
      MJ00747
      CR02510
      ES567700.1
      EX011411.1
      HG12152
      EX913290.1
      FG621267.1
      CBC13090_1
      GR17331
      CR01934
      ES412453.1
      CB043704.1
      GPC02623_1
      CR11412
      ES742493.1
      Tcol_isotig10416
      AYC00405_1
      TMC00016_1
      AS15426
      FC820908.1
      MJ00550
      Tcol_isotig10415
      FE914218.1
      FG589308.1
      MI01980
      NBC07757_1
      HGC01634_1
      CB013951.1
      WBC01982_1
      AE00514
      TS00838
      JK315658.1
      ASC13407_1
      CK850695.1
      EX915257.1
      TDC00013_1
      SSC02805_1
      CK854667.1
      ES739165.1
      EX913642.1
      DI00301
      PT00622
      FG580896.1
      MIC08500_1
      WBC02002_1
      Acan_isotig22456
      GW412730.1
      TCC02511
      DA01914
      WBC00082_1
      DVC00475_1
      Dviv_isotig10157
      HG03460
      CJC18229_1
      Name_isotig05261
      BM277704.1
      AE00629
      HCC01977_1
      Name_isotig00920
      HG09961
      GT571513.1
      PT00584
      ES565492.1
      EX006996.1
      ES570412.1
      DA01462
      Tcir_isotig06285
      HBC00741_1
      EX012925.1
      GPC00003_1
      BMC02627_1
      HG01490
      FC821495.1
      PTC00423_1
      MA02217
      BM517231.1
      CR09339
      OVC06648_1
      EX015074.1
      MHC02390_1
      CK855423.1
      HC04471
      HC04829
      TDC00013_2
      AI151736.1
      CB013661.1
      AJ275476
      EX910055.1
      GO251304.1
      GO252311.1
      GT571476.1
      DA05783
      SC01567
      CBC10714_1
      BXC01654_1
      EX559475.1
      BU086841.1
      GR17091
      GP01550
      FC820861.1
      RS06466
      SR03546
      FG589227.1
      ES561473.1
      GR17673
      NB07492
      EX010597.1
      FG589343.1
      CB043759.1
      ZP00120
      HC04468
      BM517252.1
      ASC04821_2
      CB043654.1
      FD516883.1
      ES411726.1
      GO250369.1
      HC03542
      FC821479.1
      ES412718.1
      FD517465.1
      HBC12047_1
      TDC02714_1
      HC00359
      FE910328.1
      ASC01104_1
      CRC00128_1
      EX911639.1
      BF918278.1
      TCC02057_1
      AS17832
      TSC14856_1
      AS17579
      DA01915
      DA04606
      MH11140
      EX915589.1
      OVC00373_1
      MIC03023_1
      FE919905.1
      GRC03573_1
      MC00905
      Oden_isotig17929
      FE917374.1
      Tcir_isotig03303
      JI230628.1
      MJC00043_1
      HG04028
      EX912892.1
      AE01296
      AYC00405_2
      CBC00065_2
      DW718368.1
      AS17814
      AW288269.1
      GR17674
      DAC00980_1
      GR11775
      BF599243.1
      GR17330
      BMC12362_1
      CBC05831_1
      HGC07884_1
      HG10445
      EX013177.1
      ES567691.1
      DA01463
      EX914183.1
      AJ275476.1
      EX008430.1
      EX912961.1
      PPC06812_1
      EX012181.1
      EX010213.1
      EX011792.1
      ES410120.1
      SSC01158_1
      SR01040
      EV852019.1
      TSC04200_1
      GR14615
      CSC00214_1
      CD203043.1
      GP01762
      EX910594.1
      MHC08880_1
      GP00384
      GW410726.1
      FE914693.1
      EX013108.1
      CB043660.1
      CB043703.1
      ES412896.1
      ACC08874_1
      TMC01277_1
      AI363655.1
      ACC03330_1
      EX916810.1
      CK855440.1
      CB043193.1
      JO474996.1
      MPC01043_1
      HC04866
      FG589464.1
      ACC03722_1
      PPC01665_1
      MH09313
      CJC10102_1
      PT00749
      AS03242
      BM517233.1
      ES411156.1
      EX014690.1
      RS08391
      BUC01772_1
      ES743589.1
      Acan_isotig15199
      NB07436
      AM743270.1
      EX916693.1
      JI461687.1
      TX00282
      MAC01551_1
      Acan_isotig22304
      FG589284.1
      GR18895
      PTC03253_1
      JI179261.1
      WBC00861_1
      PSC02771_1
      BM277455.1
      CD374521.1
      Tcir_isotig27930
      SRC00033_1
      ES561377.1
      HCC02897_1
      GE625521.1
      CV200460.1
    Associated_feature: WBsf652292
      WBsf652293
      WBsf981835
      WBsf998102
      WBsf998103
      WBsf231013
      WBsf231014
      WBsf231015
  Experimental_info: RNAi_result (14)
    Expr_pattern: Chronogram525
      Expr5902
      Expr1028388
      Expr1032295
      Expr1149739
      Expr2015518
      Expr2033753
    Drives_construct: WBCnstr00002433
      WBCnstr00035444
    Construct_product: WBCnstr00035444
    Microarray_results (21)
    Expression_cluster (156)
    Interaction (223)
  Map_info: Map: IV Position: 5.90161
    Positive: Positive_clone: F28D1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024230
    WBPaper00033166
    WBPaper00035215
    WBPaper00038491
    WBPaper00040293
    WBPaper00049828
    WBPaper00055090
    WBPaper00061547
    WBPaper00062338
    WBPaper00065988
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene