WormBase Tree Display for Gene: WBGene00003960
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WBGene00003960 | SMap | S_parent | Sequence | F54D5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pcs-1 | Person_evidence | WBPerson819 | |||||
Sequence_name | F54D5.1 | ||||||||
Molecular_name | F54D5.1a | ||||||||
F54D5.1a.1 | |||||||||
CE40964 | |||||||||
F54D5.1b | |||||||||
CE40965 | |||||||||
F54D5.1b.1 | |||||||||
Other_name | TFIIE-beta | Accession_evidence | EMBL | Y08815 | |||||
CePCS | Paper_evidence | WBPaper00037940 | |||||||
CELE_F54D5.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | pcs-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00003960 | |||||
WormFlux | gene | WBGene00003960 | |||||||
NDB | locus_tag | CELE_F54D5.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003960|UniProtKB=A5JYS0 | |||||||
family | PTHR33447 | ||||||||
NCBI | gene | 174775 | |||||||
RefSeq | protein | NM_001129143.5 | |||||||
NM_001129144.4 | |||||||||
KEGG | KEGG_id | 2.3.2.15 | |||||||
NemaPath | KEGG_id | 2.3.2.15 | |||||||
SwissProt | UniProtAcc | A5JYS0 | |||||||
TREEFAM | TREEFAM_ID | TF351370 | |||||||
UniProt_GCRP | UniProtAcc | A5JYS0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pcs | ||||||||
Allele (47) | |||||||||
Strain | WBStrain00039997 | ||||||||
WBStrain00040000 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (24) | |||||||||
Ortholog | WBGene00053601 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00025825 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00143839 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00121851 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00143345 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00113394 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00224620 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g7532 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g12974 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g3701 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g5650 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g12391 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g27207 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g13067 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g18807 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g17206 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g17832 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-pcs-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold473.g1675 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_01507.g21353 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_14150 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_005310 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g14418 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Sp34_20326200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g5989 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | pcs-1 encodes a phytochelatin synthase; PCS-1 exhibits cadmium-activated synthesis of phytochelatins, peptides with the general structure (gamma-Glu-Cys)n-Xaa that sequester heavy metals, and is required in animals for the response to, and detoxification of cadmium; when expressed in yeast, PCS-1 also mediates the detoxification of mercury and arsenic. | Paper_evidence | WBPaper00004738 | |||||
WBPaper00025092 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Mar 2010 00:00:00 | ||||||||
Automated_description | Enables glutathione gamma-glutamylcysteinyltransferase activity. Involved in phytochelatin biosynthetic process and response to metal ion. Expressed in several structures, including coelomocyte; non-striated muscle; pharyngeal-intestinal valve; pharynx; and rectal valve cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54D5.1a | |||||||
F54D5.1b | |||||||||
Corresponding_CDS_history | F54D5.1:wp175 | ||||||||
Corresponding_transcript | F54D5.1a.1 | ||||||||
F54D5.1b.1 | |||||||||
Other_sequence (29) | |||||||||
Associated_feature | WBsf650596 | ||||||||
WBsf666168 | |||||||||
WBsf981287 | |||||||||
WBsf223963 | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Chronogram598 | ||||||||
Expr108 | |||||||||
Expr3101 | |||||||||
Expr9005 | |||||||||
Expr1025837 | |||||||||
Expr1031884 | |||||||||
Expr1152108 | |||||||||
Expr2014789 | |||||||||
Expr2033023 | |||||||||
Drives_construct | WBCnstr00002739 | ||||||||
WBCnstr00007021 | |||||||||
WBCnstr00011137 | |||||||||
WBCnstr00035773 | |||||||||
Construct_product | WBCnstr00035773 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (112) | |||||||||
Interaction | WBInteraction000313166 | ||||||||
WBInteraction000524519 | |||||||||
WBInteraction000566350 | |||||||||
WBInteraction000566629 | |||||||||
WBInteraction000576338 | |||||||||
WBProcess | WBbiopr:00000065 | ||||||||
WBbiopr:00000096 | |||||||||
Map_info | Map | II | Position | 3.768 | Error | 0.004725 | |||
Positive | Positive_clone | F54D5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 5063 | |||||||
5479 | |||||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Sequence connection from [Vatamaniuk OK, Bucher EA]. krb 13/11/01 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |