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WormBase Tree Display for Gene: WBGene00003235

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Name Class

WBGene00003235SMapS_parentSequenceC52E4
IdentityVersion1
NameCGC_namemif-2
Sequence_nameC52E4.2
Molecular_nameC52E4.2a
C52E4.2a.1
CE08944
C52E4.2b
CE44888
C52E4.2c
CE46342
C52E4.2a.2
C52E4.2b.1
C52E4.2c.1
Other_nameCELE_C52E4.2Accession_evidenceNDBBX284605
Public_namemif-2
DB_infoDatabaseAceViewgene5M458
WormQTLgeneWBGene00003235
WormFluxgeneWBGene00003235
NDBlocus_tagCELE_C52E4.2
PanthergeneCAEEL|WormBase=WBGene00003235|UniProtKB=Q18785
familyPTHR11954
NCBIgene179638
RefSeqproteinNM_001269458.3
NM_001380779.1
NM_001380778.1
SwissProtUniProtAccQ18785
TREEFAMTREEFAM_IDTF313853
TrEMBLUniProtAccD6R8W7
G3MU38
UniProt_GCRPUniProtAccQ18785
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmif
Allele (32)
RNASeq_FPKM (74)
GO_annotation00062267
00062268
00062269
00062270
Contained_in_operonCEOP5308
OrthologWBGene00052397Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00041714Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00118804Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00145582Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00157297Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00223158Brugia malayiFrom_analysisWormBase-Compara
CSP26.g10646Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12027Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g831Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7077Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4339Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22051Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11774Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6087Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14371Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_07867.g21148Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mif-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7747Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00230.g7553Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10716Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018152Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07274Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50142800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g15893Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244730Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00109091Pristionchus pacificusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-040625-160Danio rerioFrom_analysisHieranoid
OMA
OrthoFinder
PhylomeDB
SonicParanoid
HGNC:2732Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
HGNC:33446Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
MGI:1298381Mus musculusFrom_analysisHieranoid
OMA
OrthoFinder
SonicParanoid
RGD:61923Rattus norvegicusFrom_analysisHieranoid
OMA
OrthoFinder
SonicParanoid
ParalogWBGene00003234Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003236Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003237Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable cytokine activity and phenylpyruvate tautomerase activity. Predicted to be involved in signal transduction. Predicted to be located in extracellular space. Expressed in body wall musculature; hypodermis; and vulval muscle. Is an ortholog of human DDT (D-dopachrome tautomerase) and DDTL (D-dopachrome tautomerase like).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC52E4.2a
C52E4.2b
C52E4.2c
Corresponding_transcriptC52E4.2a.1
C52E4.2a.2
C52E4.2b.1
C52E4.2c.1
Other_sequence (17)
Associated_featureWBsf653170
WBsf234599
Experimental_infoRNAi_resultWBRNAi00012323Inferred_automaticallyRNAi_primary
WBRNAi00043047Inferred_automaticallyRNAi_primary
WBRNAi00092922Inferred_automaticallyRNAi_primary
WBRNAi00064530Inferred_automaticallyRNAi_primary
Expr_patternExpr1726
Expr1728
Expr1733
Expr1019184
Expr1031531
Expr1147008
Expr2013557
Expr2031790
Drives_constructWBCnstr00000533
WBCnstr00010420
WBCnstr00036170
Construct_productWBCnstr00010420
WBCnstr00036170
AntibodyWBAntibody00002461
Microarray_results (21)
Expression_cluster (133)
Interaction (15)
Map_infoMapVPosition3.55101Error0.00145
PositivePositive_cloneC52E4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4951
Pseudo_map_position
ReferenceWBPaper00005003
WBPaper00032062
WBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00063976
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene