WormBase Tree Display for Gene: WBGene00008003

WBGene00008003 SMap: S_parent: Sequence: C38D4
  Identity: Version: 2
    Name: CGC_name: enu-3.2 Person_evidence: WBPerson3027
      Sequence_name: C38D4.1
      Molecular_name: C38D4.1a
        C38D4.1a.1
        CE17538
        C38D4.1b
      Other_name: CELE_C38D4.1 Accession_evidence: NDB BX284603
      Public_name: enu-3.2
    DB_info: Database: AceView gene 3F874
        WormQTL gene WBGene00008003
        WormFlux gene WBGene00008003
        NDB locus_tag CELE_C38D4.1
        Panther gene CAEEL|WormBase=WBGene00008003|UniProtKB=Q18507
          family PTHR31026
        NCBI gene 175633
        RefSeq protein NM_065584.9
            NR_149259.1
        TREEFAM TREEFAM_ID TF316689
        TrEMBL UniProtAcc Q18507
        UniProt_GCRP UniProtAcc Q18507
        RNAcentral URSid URS0000B8EAE2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Apr 2014 11:43:36 WBPerson2970 Name_change: CGC_name: enu-3.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: enu
    Allele: WBVar01837508
      WBVar00396668
      WBVar00823833
      WBVar00823834
      WBVar00823835
      WBVar00823836
      WBVar00823837
      WBVar00823838
      WBVar00823839
      WBVar00317430
    RNASeq_FPKM (74)
    GO_annotation: 00061451
      00061452
      00061453
    Ortholog (21)
    Paralog: WBGene00010362 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00010477 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012552 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021015 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021034 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
    Structured_description: Automated_description: Predicted to be involved in axon extension involved in axon guidance. Predicted to be located in neuronal cell body. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C38D4.1a
    Corresponding_CDS_history: C38D4.1b:wp260
    Corresponding_transcript: C38D4.1b
      C38D4.1a.1
    Associated_feature: WBsf651002
      WBsf992214
      WBsf1014806
      WBsf1014807
      WBsf226576
  Experimental_info: RNAi_result (38)
    Expr_pattern: Expr1012255
      Expr1146154
      Expr2011331
      Expr2029567
    Drives_construct: WBCnstr00033315
    Construct_product: WBCnstr00033315
    Microarray_results (18)
    Expression_cluster: WBPaper00030922:glycosylated_protein
      WBPaper00032425:up_in_lin-35
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038168:lin-35_upregulated
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045050:drh-3 (ne4253)_downregulated
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_8
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
      WBPaper00050182:lmn-1(L535P)_downregulated
      WBPaper00050193:lsm-1(tm3585)_upregulated_L3
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055364:uaf-1(n4588)_downregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059739:hira-1(gk835598)_upregulated_L1
      WBPaper00059763:neuron_expressed
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060951:mrpl-2(osa3)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
      WBPaper00061340:Parent_of_g1P_I3
      WBPaper00061340:Parent_of_tail_spike_and_hyp10
      WBPaper00061340:Rectal_cell
      WBPaper00061340:RIC
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:C16A11.5-C16C8.13
      WBPaper00061753:csr-1(tor159)_downregulated_25C
      WBPaper00062056:lin-15B(n744)_upregulated
      WBPaper00062056:lin-35(n745)_upregulated
      WBPaper00062056:met-2(n4256)_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064107:lin-35(n745)_upregulated
      WBPaper00064107:lin-52(3A)_vs_lin-52(WT)_upregulated
      WBPaper00064315:mes-3(bn199)_downregulated_EGCs
      WBPaper00064315:mes-3(bn199)_downregulated_PGCs
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064315:mes-4(bn73)_downregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065749:Heat-Shock_upregulated_N2
      WBPaper00065841:1_0
      WBPaper00065841:1_2
      WBPaper00065841:48_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066085:hda-3(ok1991)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_4_4
      WBPaper00025032:cluster_142
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00034739:N2lessDR1350
      WBPaper00035905:FBF-1_Associated
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00039866:ClassComp_daf-19_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:TA300_down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00048563:L1_DD_enriched
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_F
      [cgc6390]:intrinsic
    Interaction (11)
  Map_info: Map: III Position: -2.54628
    Positive: Positive_clone: C38D4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene