WormBase Tree Display for Gene: WBGene00006778

WBGene00006778 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 1
    Name: CGC_name: unc-42 Person_evidence: WBPerson261
      Sequence_name: F58E6.10
      Molecular_name (15)
      Other_name: CELE_F58E6.10 Accession_evidence: NDB BX284605
      Public_name: unc-42
    DB_info: Database: AceView gene 5K244
        WormQTL gene WBGene00006778
        SignaLink protein WBGene00006778
        WormFlux gene WBGene00006778
        NDB locus_tag CELE_F58E6.10
        Panther gene CAEEL|WormBase=WBGene00006778|UniProtKB=L8E946
          family PTHR24329
        NCBI gene 192081
        RefSeq protein NM_001307772.1
            NM_001276916.4
            NM_001307771.2
            NM_073118.6
            NM_001307773.2
        SwissProt UniProtAcc L8E946
        UniProt_GCRP UniProtAcc L8E946
        OMIM gene 601538
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:42 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (12)
  Disease_info: Potential_model: DOID:9406 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9455)
      DOID:1924 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9455)
      DOID:9410 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9455)
  Molecular_info: Corresponding_CDS: F58E6.10a
      F58E6.10b
      F58E6.10c
      F58E6.10d
      F58E6.10e
    Corresponding_CDS_history: F58E6.10:wp123
      F58E6.10:wp149
    Corresponding_transcript: F58E6.10a.1
      F58E6.10b.1
      F58E6.10c.1
      F58E6.10d.1
      F58E6.10e.1
    Other_sequence (20)
    Associated_feature (17)
    Transcription_factor: WBTranscriptionFactor000603
  Experimental_info: RNAi_result (13)
    Expr_pattern (12)
    Drives_construct: WBCnstr00006353
      WBCnstr00006841
      WBCnstr00010221
      WBCnstr00012736
      WBCnstr00015693
      WBCnstr00034157
    Construct_product: WBCnstr00006353
      WBCnstr00022284
      WBCnstr00034157
    Antibody: WBAntibody00000226
      WBAntibody00000227
    Microarray_results (21)
    Expression_cluster: WBPaper00028867:HLH-1_induced_TF
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:AVE-neuron_embryo_enriched
      WBPaper00037950:AVE-neuron_embryo_SelectivelyEnriched
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_SelectivelyEnriched
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00041222:unc-120(st364)_downregulated
      WBPaper00044260:1-methylnicotinamide_downregulated
      WBPaper00044260:nicotic-acid_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00046121:ecdoderm_unique
      WBPaper00046338:intestine_unique
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_4
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055226:ADR-2_target_adr-1(tm668)
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055981:fog-2(q71)_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
      WBPaper00056284:ints-5(RNAi)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059537:ngn-1(ok2200)_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060526:plp-1(ok2155)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AIB
      WBPaper00061340:ASH
      WBPaper00061340:AVA
      WBPaper00061340:AVB
      WBPaper00061340:AVD
      WBPaper00061340:AVE
      WBPaper00061340:AVH
      WBPaper00061340:AVH_parent
      WBPaper00061340:AVJ
      WBPaper00061340:AVK
      WBPaper00061340:RIH
      WBPaper00061340:RMD
      WBPaper00061340:SIA
      WBPaper00061340:SIB
      WBPaper00061340:SMB
      WBPaper00061340:SMD
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:rab-28-jbts-14_9542
      WBPaper00061651:ASH_enriched
      WBPaper00061651:AVA_enriched
      WBPaper00061651:AVB_enriched
      WBPaper00061651:AVD_enriched
      WBPaper00061651:AVE_enriched
      WBPaper00061651:RIV_enriched
      WBPaper00061651:RMD_DV_enriched
      WBPaper00061651:RMD_LR_enriched
      WBPaper00061651:RMF_enriched
      WBPaper00061651:RMH_enriched
      WBPaper00061651:SAA_enriched
      WBPaper00061651:SIB_enriched
      WBPaper00061651:SMD_enriched
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062440:crh-1(n3315)_downregulated
      WBPaper00062684:pathogen_upregulated_N2
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064871:hypoxia_downregulated_F2
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065158:25C_vs_15C_upregulated_WholeAnimal
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
      WBPaper00065841:22_0
      WBPaper00065841:32_0
      WBPaper00065841:49_0
      WBPaper00065841:52_0
      WBPaper00065841:61_0
      WBPaper00065841:66_0
      WBPaper00065841:74_0
      WBPaper00065841:76_0
      WBPaper00065841:86_0
      WBPaper00065841:94_0
      WBPaper00065841:97_0
      WBPaper00065841:98_0
      WBPaper00065841:111_0
      WBPaper00065841:115_0
      WBPaper00065841:130_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4386_cluster_6_5
      cgc4489_group_18
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045673:colistin_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
    Interaction (241)
  Map_info: Map: V Position: 2.1654 Error: 0.007367
    Well_ordered
    Positive: Inside_rearr: eDf1
        sDf29
        nDf31
        ctDp11
      Positive_clone: F58E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: nDf1
        nDf42
    Mapping_data: 2_point (27)
      Multi_point: 134
        138
        144
        146
        147
        148
        149
        150
        154
        227
        261
        264
        267
        269
        303
        304
        305
        329
        342
        363
        366
        480
        486
        487
        516
        520
        542
        543
        544
        546
        547
        608
        609
        614
        656
        662
        670
        672
        722
        723
        724
        739
        748
        781
        784
        786
        787
        797
        944
        946
        949
        951
        952
        953
        1140
        1141
        1142
        1147
        1150
        1151
        1152
        1153
        1155
        1157
        1169
        1181
        1182
        1185
        1186
        1190
        1191
        1192
        1303
        1305
        1307
        1309
        1311
        1313
        1314
        1316
        1368
        1531
        1532
        1559
        1768
        1786
        1862
        1918
        2004
        2014
        2015
        2049
        2050
        2051
        2052
        2053
        2124
        2126
        2127
        2128
        2263
        2298
        2782
        2802
        2807
        2815
        2816
        3065
        3066
        3067
        3068
        3069
        3074
        3076
        3101
        3102
        3103
        3104
        3141
        3142
        3145
        3146
        3315
        3357
        3394
        3419
        3420
        3488
        3490
        3491
        3492
        3494
        3496
        3497
        3505
        3507
        3508
        3551
        3634
        3708
        3709
        3786
        3787
        3788
        3813
        3868
        3875
        3876
        3877
        3880
        3881
        3882
        3883
        3892
        3969
        3970
        3971
        3972
        3993
        3964
        4024
        4028
        4073
        4081
        4092
        5456
        5462
        5468
        5473
        5558
        5646
        5676
        5677
        5681
        5733
      Pos_neg_data: 306
        858
        864
        1738
        1764
        1779
        1810
        2171
        9123
    Landmark_gene
  Reference (108)
  Method: Gene