WormBase Tree Display for Gene: WBGene00021496

WBGene00021496 SMap: S_parent: Sequence: Y40C5A
  Identity: Version: 2
    Name: CGC_name: daf-42 Person_evidence: WBPerson360
            WBPerson31239
      Sequence_name: Y40C5A.3
      Molecular_name (51)
      Other_name: CELE_Y40C5A.3 Accession_evidence: NDB BX284604
      Public_name: daf-42
    DB_info: Database: AceView gene 4I100
        WormQTL gene WBGene00021496
        WormFlux gene WBGene00021496
        NDB locus_tag CELE_Y40C5A.3
        NCBI gene 177507
        RefSeq protein (17)
        TREEFAM TREEFAM_ID TF342754
        TrEMBL UniProtAcc (17)
        UniProt_GCRP UniProtAcc W6RTL3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 May 2019 14:10:26 WBPerson1983 Name_change: CGC_name: daf-42
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: daf
    Allele (142)
    RNASeq_FPKM (74)
    Ortholog (19)
    Structured_description: Automated_description: Enriched in several structures, including ABalaappppa; ABalapaappa; ABalapapapa; ABalapappaa; and anterior ganglion (post) based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by four chemicals including Zidovudine; sucrose; and stearic acid based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (17)
    Corresponding_CDS_history: Y40C5A.3:wp203
      Y40C5A.3:wp208
      Y40C5A.3a:wp241
      Y40C5A.3b:wp241
    Corresponding_transcript: Y40C5A.3a.1
      Y40C5A.3b.1
      Y40C5A.3c.1
      Y40C5A.3d.1
      Y40C5A.3e.1
      Y40C5A.3f.1
      Y40C5A.3g.1
      Y40C5A.3h.1
      Y40C5A.3i.1
      Y40C5A.3j.1
      Y40C5A.3k.1
      Y40C5A.3l.1
      Y40C5A.3m.1
      Y40C5A.3n.1
      Y40C5A.3o.1
      Y40C5A.3p.1
      Y40C5A.3q.1
    Other_sequence (27)
    Associated_feature: WBsf651906
      WBsf668014
      WBsf996941
      WBsf996942
      WBsf1017688
      WBsf1017689
  Experimental_info: RNAi_result: WBRNAi00020449 Inferred_automatically: RNAi_primary
      WBRNAi00020450 Inferred_automatically: RNAi_primary
      WBRNAi00020451 Inferred_automatically: RNAi_primary
      WBRNAi00056325 Inferred_automatically: RNAi_primary
      WBRNAi00020447 Inferred_automatically: RNAi_primary
      WBRNAi00059962 Inferred_automatically: RNAi_primary
      WBRNAi00059961 Inferred_automatically: RNAi_primary
      WBRNAi00059963 Inferred_automatically: RNAi_primary
      WBRNAi00020446 Inferred_automatically: RNAi_primary
      WBRNAi00059964 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr16428
      Expr1024795
      Expr1039394
      Expr1159813
      Expr2007417
      Expr2025653
    Drives_construct: WBCnstr00043013
    Construct_product: WBCnstr00043013
    Microarray_results (17)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
      WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055226:adr-1(tm668)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:CEPso
      WBPaper00061340:IL1_parent
      WBPaper00061340:M4_parent
      WBPaper00061340:OLQ
      WBPaper00061340:OLQ_parent
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00061613:human-alpha-Synuclein(A53T)_upregulated
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066004:tdp-1(csb38)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_8
      cgc4489_group_16
      cgc4489_group_21
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036375:depleted_in_PVD_OLL
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      [cgc6390]:spermatogenesis-enriched
  Map_info: Map: IV Position: 3.32865
    Positive: Positive_clone: Y40C5A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00057489
    WBPaper00062835
    WBPaper00065378
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene