WormBase Tree Display for Gene: WBGene00001824
expand all nodes | collapse all nodes | view schema
WBGene00001824 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F13D11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | hbl-1 | Person_evidence | WBPerson698 | |||||
Sequence_name | F13D11.2 | ||||||||
Molecular_name | F13D11.2a | ||||||||
F13D11.2a.1 | |||||||||
CE27956 | |||||||||
F13D11.2b | |||||||||
CE23646 | |||||||||
F13D11.2b.1 | |||||||||
Other_name | lin-57 | ||||||||
CELE_F13D11.2 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | hbl-1 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00001824 | |||||
WormFlux | gene | WBGene00001824 | |||||||
NDB | locus_tag | CELE_F13D11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001824|UniProtKB=Q9XYD3 | |||||||
family | PTHR24392 | ||||||||
NCBI | gene | 180848 | |||||||
RefSeq | protein | NM_001047778.5 | |||||||
NM_001047779.5 | |||||||||
SwissProt | UniProtAcc | Q9XYD3 | |||||||
TREEFAM | TREEFAM_ID | TF326588 | |||||||
TrEMBL | UniProtAcc | Q27GU0 | |||||||
UniProt_GCRP | UniProtAcc | Q9XYD3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hbl | ||||||||
Allele (73) | |||||||||
Possibly_affected_by | WBVar02152888 | ||||||||
Strain (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00016189 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00005009 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00003033 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012385 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | hbl-1 encodes a C2H2-type zinc finger transcription factor related to Drosophila hunchback; hbl-1 is a heterochronic gene that plays an essential role in regulating developmental timing during postembryonic development; accordingly, mutations in hbl-1 affect locomotion, egg laying, body morphology, and hypodermal differentiation; hbl-1 is expressed in hypodermal precursor cells, neuronal precursor cells, and pharyngeal cells during embryogenesis and is primarily expressed in neurons during larval development; hbl-1 expression is negatively regulated by the let-7 miRNA whose expression is, in turn, negatively regulated by HBL-1 in a negative feedback loop. | Paper_evidence | WBPaper00003392 | |||||
WBPaper00005908 | |||||||||
WBPaper00005909 | |||||||||
WBPaper00034754 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 20 Aug 2009 00:00:00 | ||||||||
Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including egg-laying behavior; negative regulation of transcription by RNA polymerase II; and nematode larval development. Located in nucleus. Expressed in several structures, including body wall musculature; germ line; hypodermis; neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F13D11.2a | |||||||
F13D11.2b | |||||||||
Corresponding_CDS_history | F13D11.2:wp155 | ||||||||
Corresponding_transcript | F13D11.2a.1 | ||||||||
F13D11.2b.1 | |||||||||
Other_sequence | JI462622.1 | ||||||||
JI164262.1 | |||||||||
Oden_isotig23540 | |||||||||
SC01112 | |||||||||
JI164529.1 | |||||||||
MI07402 | |||||||||
MIC06569_1 | |||||||||
GR977958.1 | |||||||||
Associated_feature | WBsf019183 | ||||||||
WBsf019184 | |||||||||
WBsf019185 | |||||||||
WBsf019186 | |||||||||
WBsf019187 | |||||||||
WBsf019188 | |||||||||
WBsf019189 | |||||||||
WBsf019190 | |||||||||
WBsf019191 | |||||||||
WBsf019192 | |||||||||
WBsf019193 | |||||||||
WBsf019194 | |||||||||
WBsf662821 | |||||||||
WBsf662822 | |||||||||
WBsf662823 | |||||||||
WBsf662824 | |||||||||
WBsf662825 | |||||||||
WBsf662826 | |||||||||
WBsf662827 | |||||||||
WBsf662828 | |||||||||
WBsf662829 | |||||||||
WBsf662830 | |||||||||
WBsf716625 | |||||||||
WBsf716626 | |||||||||
WBsf718598 | |||||||||
WBsf978668 | |||||||||
WBsf1005398 | |||||||||
WBsf1005399 | |||||||||
WBsf1005400 | |||||||||
WBsf1005401 | |||||||||
WBsf1005402 | |||||||||
WBsf1005403 | |||||||||
WBsf1005404 | |||||||||
WBsf1023016 | |||||||||
WBsf1023017 | |||||||||
WBsf1023018 | |||||||||
WBsf1023019 | |||||||||
WBsf1023020 | |||||||||
WBsf1023021 | |||||||||
WBsf235756 | |||||||||
WBsf235757 | |||||||||
WBsf235758 | |||||||||
WBsf235759 | |||||||||
Transcription_factor | WBTranscriptionFactor000175 | ||||||||
Experimental_info | RNAi_result (78) | ||||||||
Expr_pattern (15) | |||||||||
Drives_construct | WBCnstr00000373 | ||||||||
WBCnstr00000374 | |||||||||
WBCnstr00009981 | |||||||||
WBCnstr00009982 | |||||||||
WBCnstr00009983 | |||||||||
WBCnstr00009984 | |||||||||
WBCnstr00012648 | |||||||||
WBCnstr00014948 | |||||||||
WBCnstr00019440 | |||||||||
WBCnstr00036665 | |||||||||
WBCnstr00039277 | |||||||||
Construct_product | WBCnstr00000374 | ||||||||
WBCnstr00009982 | |||||||||
WBCnstr00017352 | |||||||||
WBCnstr00019440 | |||||||||
WBCnstr00036665 | |||||||||
Microarray_results (27) | |||||||||
Expression_cluster (229) | |||||||||
Interaction (217) | |||||||||
Anatomy_function | WBbtf0427 | ||||||||
WBProcess | WBbiopr:00000083 | ||||||||
Map_info | Map | X | Position | -4.26909 | Error | 0.011372 | |||
Positive | Positive_clone | F13D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4396 | |||||||
Pseudo_map_position | |||||||||
Reference (125) | |||||||||
Remark | Sequence connection from [Abrahante JE, Rougvie AE] | ||||||||
old_name lin-57 becomes new_name hbl-1 from [Abrahante JE, Rougvie AE]. | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |