WormBase Tree Display for Gene: WBGene00022888
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WBGene00022888 | SMap | S_parent | Sequence | ZK1290 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rnh-1.1 | Paper_evidence | WBPaper00027023 | |||||
Sequence_name | ZK1290.6 | ||||||||
Molecular_name | ZK1290.6 | ||||||||
ZK1290.6.1 | |||||||||
CE36069 | |||||||||
Other_name | CELE_ZK1290.6 | Accession_evidence | NDB | BX284602 | |||||
Public_name | rnh-1.1 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 24 Mar 2006 09:56:26 | WBPerson2970 | Name_change | CGC_name | rnh-1.1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rnh | ||||||||
Allele | WBVar00744575 | ||||||||
WBVar00744576 | |||||||||
WBVar00744577 | |||||||||
WBVar01499702 | |||||||||
WBVar00744578 | |||||||||
WBVar00744579 | |||||||||
WBVar00744580 | |||||||||
WBVar00744581 | |||||||||
WBVar00744582 | |||||||||
WBVar00744583 | |||||||||
WBVar01498435 | |||||||||
WBVar00259681 | |||||||||
WBVar01949158 | |||||||||
WBVar00173460 | |||||||||
WBVar01438487 | |||||||||
WBVar01400171 | |||||||||
WBVar01307951 | |||||||||
WBVar01666182 | |||||||||
WBVar00068464 | |||||||||
WBVar00370303 | |||||||||
WBVar00370304 | |||||||||
WBVar00370305 | |||||||||
WBVar00370306 | |||||||||
WBVar00370307 | |||||||||
WBVar01498940 | |||||||||
WBVar00370308 | |||||||||
WBVar00370309 | |||||||||
WBVar01498772 | |||||||||
WBVar00744571 | |||||||||
WBVar00744572 | |||||||||
WBVar00744573 | |||||||||
WBVar00744574 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (5) | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00004382 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00007303 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00010787 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00011664 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | rnh-1.1 is one of four C. elegans genes that can encode an RNase H ribonuclease; when expressed in vitro, RNH-1.1 exhibits RNase H activity; rnh-1.1 transcripts are expressed from the L3 larval stage through adulthood. | Paper_evidence | WBPaper00027023 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 25 Feb 2014 00:00:00 | ||||||||
Automated_description | Enables RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK1290.6 | |||||||
Corresponding_CDS_history | ZK1290.6a:wp112 | ||||||||
ZK1290.6b:wp114 | |||||||||
Corresponding_transcript | ZK1290.6.1 | ||||||||
Other_sequence | Oden_isotig14869 | ||||||||
EX547816.1 | |||||||||
Dviv_isotig23460 | |||||||||
Oden_isotig14868 | |||||||||
ACC19014_1 | |||||||||
Tcol_isotig14970 | |||||||||
Acan_isotig02642 | |||||||||
Associated_feature | WBsf221600 | ||||||||
Experimental_info | RNAi_result | WBRNAi00059215 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038196 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021868 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002023 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011029 | ||||||||
Expr1162634 | |||||||||
Expr2015386 | |||||||||
Expr2033620 | |||||||||
Drives_construct | WBCnstr00023892 | ||||||||
Construct_product | WBCnstr00023892 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (159) | |||||||||
Interaction | WBInteraction000323076 | ||||||||
WBInteraction000401810 | |||||||||
Map_info | Map | II | Position | 0.503598 | Error | 2.2e-05 | |||
Positive | Positive_clone | ZK1290 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005577 | ||||||||
WBPaper00027023 | |||||||||
Remark | ZK1290.6 published as rnh-1.2 | Paper_evidence | WBPaper00005577 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |