WormBase Tree Display for Gene: WBGene00022759
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| WBGene00022759 | SMap | S_parent | Sequence | ZK546 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | ZK546.2 | |||||||
| Molecular_name | ZK546.2a | ||||||||
| ZK546.2a.1 | |||||||||
| CE36076 | |||||||||
| ZK546.2b | |||||||||
| CE43764 | |||||||||
| ZK546.2b.1 | |||||||||
| ZK546.2b.2 | |||||||||
| ZK546.2c | |||||||||
| Other_name | CELE_ZK546.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ZK546.2 | ||||||||
| DB_info | Database | AceView | gene | 2F237 | |||||
| WormQTL | gene | WBGene00022759 | |||||||
| WormFlux | gene | WBGene00022759 | |||||||
| NDB | locus_tag | CELE_ZK546.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022759|UniProtKB=Q23526 | |||||||
| family | PTHR48051 | ||||||||
| NCBI | gene | 173855 | |||||||
| RefSeq | protein | NR_151581.1 | |||||||
| NM_170985.5 | |||||||||
| NM_001393057.1 | |||||||||
| TrEMBL | UniProtAcc | Q23526 | |||||||
| Q95PW8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23526 | |||||||
| RNAcentral | URSid | URS0000CBFF7A | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar01429649 | ||||||||
| WBVar01499702 | |||||||||
| WBVar01477443 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00223103 | |||||||||
| WBVar01437668 | |||||||||
| WBVar02129871 | |||||||||
| WBVar00171808 | |||||||||
| WBVar00365144 | |||||||||
| WBVar00365145 | |||||||||
| WBVar00365146 | |||||||||
| WBVar00365147 | |||||||||
| WBVar00365148 | |||||||||
| WBVar00365149 | |||||||||
| WBVar00365150 | |||||||||
| WBVar00365151 | |||||||||
| WBVar00729070 | |||||||||
| WBVar00729071 | |||||||||
| WBVar00729072 | |||||||||
| WBVar00729073 | |||||||||
| WBVar00729074 | |||||||||
| WBVar00729075 | |||||||||
| WBVar00729076 | |||||||||
| WBVar01498761 | |||||||||
| WBVar00729077 | |||||||||
| WBVar00729078 | |||||||||
| WBVar00729079 | |||||||||
| WBVar00729080 | |||||||||
| WBVar00729081 | |||||||||
| WBVar00729082 | |||||||||
| WBVar00729083 | |||||||||
| WBVar00729084 | |||||||||
| WBVar00729085 | |||||||||
| WBVar00729086 | |||||||||
| WBVar00729087 | |||||||||
| WBVar00729088 | |||||||||
| WBVar01239663 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP2690 | ||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00003068 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00002632 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004929 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009647 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ADE sheath cell; PLM; anterior ganglion; germ line; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; daf-12; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including Zidovudine; paraquat; and Hydrolyzable Tannins based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; Leucine Rich Repeat; Leucine-rich repeat; Leucine-rich repeat domain superfamily; and Leucine rich repeat. Is an ortholog of human LRRC57 (leucine rich repeat containing 57). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK546.2a | |||||||
| ZK546.2b | |||||||||
| Corresponding_CDS_history | ZK546.2a:wp112 | ||||||||
| ZK546.2b:wp203 | |||||||||
| ZK546.2c:wp261 | |||||||||
| Corresponding_transcript | ZK546.2c | ||||||||
| ZK546.2a.1 | |||||||||
| ZK546.2b.1 | |||||||||
| ZK546.2b.2 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf644147 | ||||||||
| WBsf644148 | |||||||||
| WBsf644149 | |||||||||
| WBsf644150 | |||||||||
| WBsf644151 | |||||||||
| WBsf657548 | |||||||||
| WBsf987748 | |||||||||
| WBsf221206 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022052 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022053 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038332 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061964 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062490 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026776 | ||||||||
| Expr1040062 | |||||||||
| Expr1162922 | |||||||||
| Expr2008869 | |||||||||
| Expr2027102 | |||||||||
| Drives_construct | WBCnstr00023997 | ||||||||
| Construct_product | WBCnstr00023997 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction | WBInteraction000197445 | ||||||||
| WBInteraction000280346 | |||||||||
| WBInteraction000313845 | |||||||||
| WBInteraction000367173 | |||||||||
| WBInteraction000576468 | |||||||||
| Map_info | Positive | Positive_clone | ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -2.73082 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
