WormBase Tree Display for Gene: WBGene00022495

WBGene00022495 SMap: S_parent: Sequence: Y119D3B
  Identity: Version: 3
    Name: CGC_name: fbxa-78 Person_evidence: WBPerson655
      Sequence_name: Y119D3B.19
      Molecular_name: Y119D3B.19
        Y119D3B.19.1
        CE15008
      Other_name: CELE_Y119D3B.19 Accession_evidence: NDB BX284603
      Public_name: fbxa-78
    DB_info: Database: AceView gene 3C346
        WormQTL gene WBGene00022495
        WormFlux gene WBGene00022495
        NDB locus_tag CELE_Y119D3B.19
        NCBI gene 191046
        RefSeq protein NM_064957.7
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc G5EDF8
        UniProt_GCRP UniProtAcc G5EDF8
    Species: Caenorhabditis elegans
    History: Version_change (3)
      Acquires_merge: WBGene00043944
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele: WBVar02122814
      WBVar02124102
      WBVar02121160
      WBVar01498421
      WBVar01500082
      WBVar02122455
      WBVar02123378
      WBVar01499552
      WBVar02124687
      WBVar02123218
      WBVar01498832
      WBVar02120835
      WBVar02124886
      WBVar02123052
      WBVar02120476
      WBVar02121584
      WBVar02120666
      WBVar02121405
      WBVar02123987
      WBVar00304242
      WBVar02121975
      WBVar01498691
      WBVar02122560
      WBVar02122377
      WBVar02122934
      WBVar01498734
      WBVar01498558
      WBVar01498757
      WBVar01606642
      WBVar02123903
      WBVar01498589
      WBVar01499879
      WBVar01499880
    RNASeq_FPKM (74)
    Ortholog: WBGene00042835 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00122765 Caenorhabditis japonica From_analysis: Inparanoid_8
      CSP28.g15362 Caenorhabditis panamensis From_analysis: WormBase-Compara
      chrIII_pilon.g6909 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00065925 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog (199)
    Structured_description: Concise_description: fbxa-78 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-78 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including hydrogen sulfide; methylmercury hydroxide; and sesamin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y119D3B.19
    Corresponding_transcript: Y119D3B.19.1
    Associated_feature: WBsf991260
      WBsf991261
      WBsf226199
  Experimental_info (7)
  Map_info: Map: III Position: -22.5751
    Positive: Positive_clone: Y119D3B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00041771
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene