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WormBase Tree Display for Gene: WBGene00021697

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Name Class

WBGene00021697SMapS_parentSequenceY48G9A
IdentityVersion3
NameCGC_namegcn-1Person_evidenceWBPerson644
Sequence_nameY48G9A.3
Molecular_nameY48G9A.3
Y48G9A.3.1
CE54096
Other_nameY48G9A.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.lCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.mCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.nCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.oCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y48G9A.3Accession_evidenceNDBBX284603
Public_namegcn-1
DB_infoDatabaseAceViewgene3D249
WormQTLgeneWBGene00021697
WormFluxgeneWBGene00021697
NDBlocus_tagCELE_Y48G9A.3
PanthergeneCAEEL|WormBase=WBGene00021697|UniProtKB=B3CJ34
familyPTHR23346
NCBIgene190051
RefSeqproteinNM_001381763.1
TREEFAMTREEFAM_IDTF105398
TrEMBLUniProtAccB3CJ34
UniProt_GCRPUniProtAccB3CJ34
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
215 Sep 2008 11:24:05WBPerson2970Name_changeCGC_namegcn-1
307 May 2008 11:46:03WBPerson1867EventAcquires_mergeWBGene00021695
Acquires_mergeWBGene00021695
WBGene00021696
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgcn
AlleleWBVar00808136
WBVar01327099
WBVar01912871
WBVar00808137
WBVar01327101
WBVar00046008
WBVar01912872
WBVar00045683
WBVar00808138
WBVar00027441
WBVar01327103
WBVar01944451
WBVar02074709
WBVar00808139
WBVar01327104
WBVar02074710
WBVar00808140
WBVar00027446
WBVar01327106
WBVar02086559
WBVar00808141
WBVar00046018
WBVar02145017
WBVar00808142
WBVar01327107
WBVar01479281
WBVar00045693
WBVar00808143
WBVar01327110
WBVar01479282
WBVar00027451
WBVar01327111
WBVar00808144
WBVar01327112
WBVar00808145
WBVar00045698
WBVar00046023
WBVar01327113
WBVar00808146
WBVar01893082
WBVar01258974
WBVar00808147
WBVar00027456
WBVar01327114
WBVar00045703
WBVar01258975
WBVar00808148
WBVar01327117
WBVar02141310
WBVar00046028
WBVar01898670
WBVar01258976
WBVar01327118
WBVar02151805
WBVar00808149
WBVar01258977
WBVar01327119
WBVar00808150
WBVar00027461
WBVar01500082
WBVar01667182
WBVar01898671
WBVar01898672
WBVar01258979
WBVar01327121
WBVar00808151
WBVar00046033
WBVar00045708
WBVar01898673
WBVar01327122
WBVar00808152
WBVar01900700
WBVar01258981
WBVar01258982
WBVar00027466
WBVar01493460
WBVar00808153
WBVar01898674
WBVar02101475
WBVar01327124
WBVar01900701
WBVar00045713
WBVar01327125
WBVar00808154
WBVar01817865
WBVar01900702
WBVar02101476
WBVar00808155
WBVar01817866
WBVar01491254
WBVar01900703
WBVar01258986
WBVar01327126
WBVar00027471
WBVar01327128
WBVar01258989
WBVar00808156
WBVar01258990
WBVar00045718
WBVar00808157
WBVar01327130
WBVar01327133
WBVar01258994
WBVar00808158
WBVar01327135
WBVar00808159
WBVar01258997
WBVar00045723
WBVar01327136
WBVar00808160
WBVar00808161
WBVar01258998
WBVar01415548
WBVar01415549
WBVar00027481
WBVar01327140
WBVar00808162
WBVar01258999
WBVar01259005
WBVar00045728
WBVar00808163
WBVar01415550
WBVar01327143
WBVar00808164
WBVar01327149
WBVar01415551
WBVar00808165
WBVar01259008
WBVar01415554
WBVar00027486
WBVar01327151
WBVar01259010
WBVar00808166
WBVar01259014
WBVar01415557
WBVar01327153
WBVar02146676
WBVar00808167
WBVar01415558
WBVar00027491
WBVar00808168
WBVar01259015
WBVar01327154
WBVar01496604
WBVar01415559
WBVar00808169
WBVar01327156
WBVar01327158
WBVar00808170
WBVar00045743
WBVar01989725
WBVar01259018
WBVar00808171
WBVar01327159
WBVar00027496
WBVar01259023
WBVar01444219
WBVar01444220
WBVar02041269
WBVar00808172
WBVar01259026
WBVar01327162
WBVar02041270
WBVar00027501
WBVar00808173
WBVar00045748
WBVar01444221
WBVar02041271
WBVar01444223
WBVar01327164
WBVar00808174
WBVar02041272
WBVar01259030
WBVar01444224
WBVar01327167
WBVar00808175
WBVar00808176
WBVar01444225
WBVar01327170
WBVar01259033
WBVar00027506
WBVar00045753
WBVar02041273
WBVar02114750
WBVar01444226
WBVar01259034
WBVar00808177
WBVar00808178
WBVar01444227
WBVar00027511
WBVar01259035
WBVar00808179
WBVar01259036
WBVar00045758
WBVar01444228
WBVar00027516
WBVar01444229
WBVar00808180
WBVar01259037
WBVar00808181
WBVar01259038
WBVar01444230
WBVar00808182
WBVar00045763
WBVar01444231
WBVar01259039
WBVar01708532
WBVar00027521
WBVar00252324
WBVar01444232
WBVar01708533
WBVar00808183
WBVar00808184
WBVar01708534
WBVar01444233
WBVar01259041
WBVar02094147
WBVar00808185
WBVar01259042
WBVar01444234
WBVar01708535
WBVar00045768
WBVar01708536
WBVar01259043
WBVar01444235
WBVar00808186
WBVar00027526
WBVar01444236
WBVar01259047
WBVar00808187
WBVar01708537
WBVar01259048
WBVar00045773
WBVar00097324
WBVar01444237
WBVar01498832
WBVar01708538
WBVar00808188
WBVar01444238
WBVar00027531
WBVar01708539
WBVar00097325
WBVar01259049
WBVar00808189
WBVar00808190
WBVar00097326
WBVar01444239
WBVar01708540
WBVar01259052
WBVar00045778
WBVar01496074
WBVar00808191
WBVar01708541
WBVar01444241
WBVar00097327
WBVar01259053
WBVar01708542
WBVar00808192
WBVar00027536
WBVar01444242
WBVar01708543
WBVar01259054
WBVar00808193
WBVar01444244
WBVar00097330
WBVar01708544
WBVar00045783
WBVar01490741
WBVar00808194
WBVar01444245
WBVar00097332
WBVar01259055
WBVar01259056
WBVar00027541
WBVar00808195
WBVar01444246
WBVar01708545
WBVar00097334
WBVar00265229
WBVar00808196
WBVar01708546
WBVar01937920
WBVar00097337
WBVar01259057
WBVar01793381
WBVar01708547
WBVar00045788
WBVar01937921
WBVar01793382
WBVar00808197
WBVar01708548
WBVar00027546
WBVar00808198
WBVar01259063
WBVar01793383
WBVar01937922
WBVar00808199
WBVar01259066
WBVar01793384
WBVar01708549
WBVar01937923
WBVar01259067
WBVar00045793
WBVar01793385
WBVar01708550
WBVar02074029
WBVar01937924
WBVar00808200
WBVar02074030
WBVar01793386
WBVar00808201
WBVar01708551
WBVar00027551
WBVar01259070
WBVar01937925
WBVar01793387
WBVar01259071
WBVar01937926
WBVar00808202
WBVar01606906
WBVar01708552
WBVar01937927
WBVar01606907
WBVar02151490
WBVar01259072
WBVar01708553
WBVar00808203
WBVar01793388
WBVar01606908
WBVar00027556
WBVar01835511
WBVar01937928
WBVar01708554
WBVar00808204
WBVar01708555
WBVar02081655
WBVar01259074
WBVar01937929
WBVar00808205
WBVar01259075
WBVar01708556
WBVar00808206
WBVar02081656
WBVar02102264
WBVar00027561
WBVar00808207
WBVar00235852
WBVar01540770
WBVar01708557
WBVar00808208
WBVar01540771
WBVar00235853
WBVar01708558
WBVar02099506
WBVar02077579
WBVar01540772
WBVar00808209
WBVar00235854
WBVar01708559
WBVar01708560
WBVar00027566
WBVar01540773
WBVar00235855
WBVar00808210
WBVar00235856
WBVar01540774
WBVar00045818
WBVar01540775
WBVar00235858
WBVar00027571
WBVar01540776
WBVar00045823
WBVar01540777
WBVar00235859
WBVar02030523
WBVar00235860
WBVar02030524
WBVar00027576
WBVar00235861
WBVar00235862
WBVar00045828
WBVar02030525
WBVar01951663
WBVar02018656
WBVar02030526
WBVar01951665
WBVar02018657
WBVar00027581
WBVar00045833
WBVar01951666
WBVar01951667
WBVar00808036
WBVar01686617
WBVar00808037
WBVar01951668
WBVar00027586
WBVar01686618
WBVar01951669
WBVar00808038
WBVar00045838
WBVar01686619
WBVar01686620
WBVar01951670
WBVar02110013
WBVar00808039
WBVar00808040
WBVar01951671
WBVar00027591
WBVar01686621
WBVar02110014
WBVar01686622
WBVar00808041
WBVar00045843
WBVar01951672
WBVar01686623
WBVar00808042
WBVar01951673
WBVar00233296
WBVar01497215
WBVar01686624
WBVar00808043
WBVar01951674
WBVar00233297
WBVar00045848
WBVar01686625
WBVar00233298
WBVar00808044
WBVar02046773
WBVar01951677
WBVar00090954
WBVar01983800
WBVar01686626
WBVar00808046
WBVar01983801
WBVar00808047
WBVar01686627
WBVar00808048
WBVar01686628
WBVar00045853
WBVar00808049
WBVar01686629
WBVar00808050
WBVar00045528
WBVar01686630
WBVar01918507
WBVar00027606
WBVar00808051
WBVar00045858
WBVar01686631
WBVar01918508
WBVar00808052
WBVar01686632
WBVar01918509
WBVar02103214
WBVar02119963
WBVar00045533
WBVar01686633
WBVar00027611
WBVar01918512
WBVar00808053
WBVar00045863
WBVar00808054
WBVar01918513
WBVar01686634
WBVar01686635
WBVar00808055
WBVar00261776
WBVar01686636
WBVar00808056
WBVar00252566
WBVar02033953
WBVar00027616
WBVar00045538
WBVar00808057
WBVar00045868
WBVar02087947
WBVar01686637
WBVar02033954
WBVar00808058
WBVar02033955
WBVar02087948
WBVar02033956
WBVar02087949
WBVar00027621
WBVar00808059
WBVar02033957
WBVar00808060
WBVar00045873
WBVar02033958
WBVar00808061
WBVar00045548
WBVar00808062
WBVar01407794
WBVar02033959
WBVar00027626
WBVar01407795
WBVar02033960
WBVar01722069
WBVar00808063
WBVar01722070
WBVar01407796
WBVar01852255
WBVar00808064
WBVar02151719
WBVar02033961
WBVar00045553
WBVar01407797
WBVar00808065
WBVar00027631
WBVar00045883
WBVar01722071
WBVar01407798
WBVar00808066
WBVar01722072
WBVar01770925
WBVar01407799
WBVar00808067
WBVar00045558
WBVar01722073
WBVar00808068
WBVar02012858
WBVar01722074
WBVar01770926
WBVar00045888
WBVar00027636
WBVar01722075
WBVar02012859
WBVar01407801
WBVar01770927
WBVar00391425
WBVar00808069
WBVar02131598
WBVar01407802
WBVar01722076
WBVar00808070
WBVar01770928
WBVar00045563
WBVar01962054
WBVar02012860
WBVar00391426
WBVar00808071
WBVar00045893
WBVar01722077
WBVar01770929
WBVar02131599
WBVar00391427
WBVar01407803
WBVar00027641
WBVar01962055
WBVar01785131
WBVar01962056
WBVar01770930
WBVar00391428
WBVar01565515
WBVar01722078
WBVar01407804
WBVar00808072
WBVar02131600
WBVar01407805
WBVar01722079
WBVar01962058
WBVar01770931
WBVar00391429
WBVar01565516
WBVar00045568
WBVar00808073
WBVar01785132
WBVar01565517
WBVar00045898
WBVar01962059
WBVar01722080
WBVar01770932
WBVar01407806
WBVar00391430
WBVar00027646
WBVar02071649
WBVar01785133
WBVar00808074
WBVar01722081
WBVar01565518
WBVar01770933
WBVar01407807
WBVar02071650
WBVar00391431
WBVar01785134
WBVar00808075
WBVar01962060
WBVar01407808
WBVar01722082
WBVar01565519
WBVar00045573
WBVar00808076
WBVar01627781
WBVar01962061
WBVar01785135
WBVar00391432
WBVar01507388
WBVar01770934
WBVar01565520
WBVar01407809
WBVar00391433
WBVar01785136
WBVar00808077
WBVar01962062
WBVar01770935
WBVar01722083
WBVar00027651
WBVar01627782
WBVar01507389
WBVar00808078
WBVar01507390
WBVar01962063
WBVar01785137
WBVar01565521
WBVar01407810
WBVar00391434
WBVar01770936
WBVar01722084
WBVar00045578
WBVar01820747
WBVar01785138
WBVar01962064
WBVar01565522
WBVar01507391
WBVar01770937
WBVar01722085
WBVar00808079
WBVar00391435
WBVar00045908
WBVar01785139
WBVar01962065
WBVar01491547
WBVar01770938
WBVar00808080
WBVar00027656
WBVar01565523
WBVar00391436
WBVar01507392
WBVar01565524
WBVar01507393
WBVar00391437
WBVar00808081
WBVar02148171
WBVar01770939
WBVar01785140
WBVar01962067
WBVar01565525
WBVar01785141
WBVar00045913
WBVar01770940
WBVar00045583
WBVar01962068
WBVar01507394
WBVar00391438
WBVar01802331
WBVar00808082
WBVar01785142
WBVar00808083
WBVar01565526
WBVar00391439
WBVar00027661
WBVar01507395
WBVar00808084
WBVar00391440
WBVar01785143
WBVar01507396
WBVar01565527
WBVar01785144
WBVar00808085
WBVar00391441
WBVar00045588
WBVar00045918
WBVar00808086
WBVar00027666
WBVar01785145
WBVar00391442
WBVar00323160
WBVar00808087
WBVar01785146
WBVar00391443
WBVar02014951
WBVar02014952
WBVar00045593
WBVar01785147
WBVar00045923
WBVar00391444
WBVar00808088
WBVar02014953
WBVar00391445
WBVar00808089
WBVar01785148
WBVar02014954
WBVar00808090
WBVar00391446
WBVar00808091
WBVar00045928
WBVar02112456
WBVar02014955
WBVar00391447
WBVar00808092
WBVar02053148
WBVar00391448
WBVar02014956
WBVar02112457
WBVar02053149
WBVar00808093
WBVar02112458
WBVar02014957
WBVar00391449
WBVar00045933
WBVar02049616
WBVar00391450
WBVar02014958
WBVar02053150
WBVar00808094
WBVar00808095
WBVar00391451
WBVar01908397
WBVar00045608
WBVar02049617
WBVar01837268
WBVar02014959
WBVar00808096
WBVar00323169
WBVar00391452
WBVar02014960
WBVar01837269
WBVar02049618
WBVar00808097
WBVar02014961
WBVar00391453
WBVar01837270
WBVar00045938
WBVar02049619
WBVar00808098
WBVar00045613
WBVar00391454
WBVar01837271
WBVar02014962
WBVar02151754
WBVar02014963
WBVar01837272
WBVar00808099
WBVar00391455
WBVar00808100
WBVar00045943
WBVar02014964
WBVar01837273
WBVar00391456
WBVar00808101
WBVar02014965
WBVar00391457
WBVar01837274
WBVar02014966
WBVar00391458
WBVar00808102
WBVar00808103
WBVar00391459
WBVar02014967
WBVar02075603
WBVar00045948
WBVar00045623
WBVar01827053
WBVar00808104
WBVar00391460
WBVar01827054
WBVar01327045
WBVar00808105
WBVar01488628
WBVar00391461
WBVar00391462
WBVar00045953
WBVar00808106
WBVar01827055
WBVar01327046
WBVar00045628
WBVar00391463
WBVar00808107
WBVar01827056
WBVar00808108
WBVar01827057
WBVar01327051
WBVar00391464
WBVar00045958
WBVar00309853
WBVar00391465
WBVar00808109
WBVar01327053
WBVar00045633
WBVar00391466
WBVar01327054
WBVar00808110
WBVar01401320
WBVar00391467
WBVar01327057
WBVar00808111
WBVar00045963
WBVar01327058
WBVar01396071
WBVar00391468
WBVar01401321
WBVar00808112
WBVar01396072
WBVar01327059
WBVar00391469
WBVar00808113
WBVar02070763
WBVar00808114
WBVar01401323
WBVar00391470
WBVar01396073
WBVar00045643
WBVar00808115
WBVar00391471
WBVar01396074
WBVar01401324
WBVar01327062
WBVar01401325
WBVar00808116
WBVar01327064
WBVar01396075
WBVar00391472
WBVar00808117
WBVar01396076
WBVar00391473
WBVar00045648
WBVar01327065
WBVar00045973
WBVar01401326
WBVar00808118
WBVar01401327
WBVar00391474
WBVar01327066
WBVar02108249
WBVar02108250
WBVar01327068
WBVar01396078
WBVar01401329
WBVar00391475
WBVar00808119
WBVar01327069
WBVar02108251
WBVar00391476
WBVar01396079
WBVar00808120
WBVar00045653
WBVar00045978
WBVar00808121
WBVar00391477
WBVar01327070
WBVar01396080
WBVar00808122
WBVar00391478
WBVar01396081
WBVar01327071
WBVar00561270
WBVar00561276
WBVar00045658
WBVar00391479
WBVar01396082
WBVar00808123
WBVar00808124
WBVar00391480
WBVar01396083
WBVar00561296
WBVar01327075
WBVar01327076
WBVar00045988
WBVar00391481
WBVar01396084
WBVar00808125
WBVar00561297
WBVar01396085
WBVar01327078
WBVar00391482
WBVar00027421
WBVar00808126
WBVar00561300
WBVar01701635
WBVar01396086
WBVar02078987
WBVar00808127
WBVar01327079
WBVar00391483
WBVar00561301
WBVar02007553
WBVar01701636
WBVar00561303
WBVar01327080
WBVar00391484
WBVar00045993
WBVar00808128
WBVar00045668
WBVar01396087
WBVar02007554
WBVar01327081
WBVar00391485
WBVar01701637
WBVar00027426
WBVar00808129
WBVar00561306
WBVar00391486
WBVar02007555
WBVar01327082
WBVar02078245
WBVar00808130
WBVar01701638
WBVar00561307
WBVar00045673
WBVar02007556
WBVar00561314
WBVar00391487
WBVar01701639
WBVar00045998
WBVar01327085
WBVar00808131
WBVar01327086
WBVar00391488
WBVar00027431
WBVar00808132
WBVar01489392
WBVar02148223
WBVar00808133
WBVar01327089
WBVar00045678
WBVar00046003
WBVar00808134
WBVar01327090
WBVar01327093
WBVar00808135
WBVar01912870
WBVar00027436
StrainWBStrain00034488
WBStrain00027623
RNASeq_FPKM (74)
GO_annotation (13)
Contained_in_operonCEOP3834
Ortholog (53)
ParalogWBGene00008422Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010364Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptiongcn-1 encodes the C. elegans ortholog of the S. cerevisiae ribosome-associated protein Gcn1p; GCN-1, along with ABCF-3, is required for maintaining the steady-state levels of phosphorylated eIF2alpha, and thus for the translational control of a number of mRNAs; GCN-1 activity is required, in parallel to, or downstream of, the canonical apoptotic pathway, for apoptotic cell death of most somatic cells and germ cells in response to ionizing radiation; in addition, GCN-1 is required for normal growth rates, and spatial organization of germ cells in the gonad; as in S. cerevisiae, GCN-1 physically interacts with ABCF-3, the C. elegans ortholog of budding yeast Gcn20p, and GCN-1 and ABCF-3 are each required for the other's stability; a gcn-1::gfp promoter fusion is expressed in most cells, including germ cells, throughout development.Paper_evidenceWBPaper00045601
Curator_confirmedWBPerson1843
Date_last_updated15 Aug 2014 00:00:00
Automated_descriptionPredicted to enable protein kinase regulator activity. Involved in positive regulation of peptidyl-serine phosphorylation; regulation of apoptotic process; and regulation of translation. Acts upstream of with a positive effect on positive regulation of gene expression. Acts upstream of or within with a negative effect on negative regulation of translation. Predicted to be located in cytosolic ribosome. Expressed in several structures, including body wall musculature; head neurons; hermaphrodite gonad; intestinal cell; and pharyngeal neurons. Is an ortholog of human GCN1 (GCN1 activator of EIF2AK4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48G9A.3
Corresponding_CDS_historyY48G9A.3:wp150
Y48G9A.3:wp191
Y48G9A.3:wp237
Y48G9A.3:wp275
Corresponding_transcriptY48G9A.3.1
Other_sequence (91)
Associated_feature (40)
Experimental_infoRNAi_resultWBRNAi00056982Inferred_automaticallyRNAi_primary
WBRNAi00056977Inferred_automaticallyRNAi_primary
WBRNAi00037280Inferred_automaticallyRNAi_primary
WBRNAi00093045Inferred_automaticallyRNAi_primary
WBRNAi00077044Inferred_automaticallyRNAi_primary
WBRNAi00037275Inferred_automaticallyRNAi_primary
WBRNAi00056981Inferred_automaticallyRNAi_primary
Expr_patternExpr11922
Expr11923
Expr1022586
Expr1039504
Expr1160428
Expr2011967
Expr2030204
Drives_constructWBCnstr00019541
Construct_productWBCnstr00019540
Regulate_expr_clusterWBPaper00065578:gcn-1(nc40)_downregulated
WBPaper00065578:gcn-1(nc40)_upregulated
AntibodyWBAntibody00002554
Microarray_results (42)
Expression_cluster (163)
Interaction (150)
Map_infoMapIIIPosition-15.0586Error0.039572
PositivePositive_cloneY48G9AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene