WormBase Tree Display for Gene: WBGene00018102
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WBGene00018102 | SMap | S_parent | Sequence | F36H5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | math-28 | Person_evidence | WBPerson655 | |||
Sequence_name | F36H5.3 | ||||||
Molecular_name | F36H5.3a | ||||||
F36H5.3a.1 | |||||||
CE35525 | |||||||
F36H5.3b | |||||||
CE09960 | |||||||
F36H5.3b.1 | |||||||
Other_name | CELE_F36H5.3 | Accession_evidence | NDB | BX284602 | |||
Public_name | math-28 | ||||||
DB_info | Database | WormQTL | gene | WBGene00018102 | |||
SignaLink | protein | WBGene00018102 | |||||
WormFlux | gene | WBGene00018102 | |||||
NDB | locus_tag | CELE_F36H5.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00018102|UniProtKB=Q2L6V3 | |||||
family | PTHR46308 | ||||||
NCBI | gene | 185383 | |||||
RefSeq | protein | NM_001047308.1 | |||||
NM_001047307.3 | |||||||
TREEFAM | TREEFAM_ID | TF322050 | |||||
TrEMBL | UniProtAcc | Q2L6V3 | |||||
P91298 | |||||||
UniProt_GCRP | UniProtAcc | Q2L6V3 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele | WBVar00041826 | ||||||
WBVar00707545 | |||||||
WBVar00707546 | |||||||
WBVar00707547 | |||||||
WBVar01499702 | |||||||
WBVar00041831 | |||||||
WBVar00707548 | |||||||
WBVar00707549 | |||||||
WBVar00707550 | |||||||
WBVar00707551 | |||||||
WBVar02120604 | |||||||
WBVar00041836 | |||||||
WBVar02123182 | |||||||
WBVar00707552 | |||||||
WBVar00707553 | |||||||
WBVar00707554 | |||||||
WBVar00041841 | |||||||
WBVar00707555 | |||||||
WBVar00707556 | |||||||
WBVar00707557 | |||||||
WBVar00041846 | |||||||
WBVar00707558 | |||||||
WBVar02121716 | |||||||
WBVar00041851 | |||||||
WBVar00707559 | |||||||
WBVar00707560 | |||||||
WBVar02123007 | |||||||
WBVar00041856 | |||||||
WBVar02121537 | |||||||
WBVar00041861 | |||||||
WBVar00041866 | |||||||
WBVar00041871 | |||||||
WBVar02122097 | |||||||
WBVar00041876 | |||||||
WBVar00041881 | |||||||
WBVar01534624 | |||||||
WBVar00041886 | |||||||
WBVar01534625 | |||||||
WBVar01534626 | |||||||
WBVar01534627 | |||||||
WBVar01534628 | |||||||
WBVar01534629 | |||||||
WBVar01500106 | |||||||
WBVar00236189 | |||||||
WBVar00236190 | |||||||
WBVar00236191 | |||||||
WBVar02124326 | |||||||
WBVar02121946 | |||||||
WBVar01498306 | |||||||
WBVar02124543 | |||||||
WBVar02122524 | |||||||
WBVar00091181 | |||||||
WBVar01499649 | |||||||
WBVar02122773 | |||||||
WBVar01933613 | |||||||
WBVar01933614 | |||||||
WBVar01933615 | |||||||
WBVar01933616 | |||||||
WBVar01933617 | |||||||
WBVar02121124 | |||||||
WBVar00041781 | |||||||
WBVar00357795 | |||||||
WBVar00357796 | |||||||
WBVar00357797 | |||||||
WBVar00357798 | |||||||
WBVar00041786 | |||||||
WBVar00357799 | |||||||
WBVar00041791 | |||||||
WBVar00357800 | |||||||
WBVar00357801 | |||||||
WBVar00098507 | |||||||
WBVar00098508 | |||||||
WBVar00357802 | |||||||
WBVar00357803 | |||||||
WBVar00098509 | |||||||
WBVar00041796 | |||||||
WBVar00098510 | |||||||
WBVar00041801 | |||||||
WBVar00098511 | |||||||
WBVar00098512 | |||||||
WBVar00098513 | |||||||
WBVar00041806 | |||||||
WBVar00098514 | |||||||
WBVar00091057 | |||||||
WBVar00098515 | |||||||
WBVar00098516 | |||||||
WBVar00041811 | |||||||
WBVar02124456 | |||||||
WBVar02122433 | |||||||
WBVar00041816 | |||||||
WBVar02120776 | |||||||
WBVar00707542 | |||||||
WBVar00041821 | |||||||
WBVar00707543 | |||||||
WBVar00707544 | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00154588 | Caenorhabditis brenneri | From_analysis | TreeFam | |||
WBGene00143314 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19300 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold630.g19304 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
chrII_pilon.g3468 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (85) | |||||||
Structured_description | Automated_description | Enriched in several structures, including ABplpapppa; ABplpppppp; ABprpppppp; dopaminergic neurons; and mechanosensory neurons based on microarray; tiling array; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Tunicamycin; Sodium Chloride; and metformin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F36H5.3a | |||||
F36H5.3b | |||||||
Corresponding_CDS_history | F36H5.3:wp107 | ||||||
F36H5.3:wp153 | |||||||
Corresponding_transcript | F36H5.3a.1 | ||||||
F36H5.3b.1 | |||||||
Associated_feature | WBsf986808 | ||||||
Experimental_info | RNAi_result | WBRNAi00014456 | Inferred_automatically | RNAi_primary | |||
WBRNAi00046542 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00031884 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1015608 | ||||||
Expr1150434 | |||||||
Expr2013404 | |||||||
Expr2031638 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (134) | |||||||
SAGE_tag | SAGE:ttgaaattta | Strand | Sense | ||||
Unambiguously_mapped | |||||||
SAGE:aagtccttct | Strand | Antisense | |||||
SAGE:ttggcaatat | Strand | Antisense | |||||
SAGE:gagaaggact | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aataaacctc | Strand | Antisense | |||||
SAGE:gtttttttca | Strand | Antisense | |||||
SAGE:tgaaaattaa | Strand | Sense | |||||
Unambiguously_mapped | |||||||
SAGE:aataaacctcacacaag | Strand | Antisense | |||||
SAGE:agagagcagg | Strand | Antisense | |||||
SAGE:gaatctcaaa | Strand | Antisense | |||||
Interaction (5) | |||||||
Map_info | Map | II | Position | -14.4752 | Error | 0.004334 | |
Positive | Positive_clone | F36H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |