WormBase Tree Display for Gene: WBGene00009891
expand all nodes | collapse all nodes | view schema
| WBGene00009891 | SMap | S_parent | Sequence | F49E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scl-10 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F49E11.5 | ||||||||
| Molecular_name | F49E11.5 | ||||||||
| F49E11.5.1 | |||||||||
| CE05901 | |||||||||
| Other_name | CELE_F49E11.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | scl-10 | ||||||||
| DB_info | Database | AceView | gene | 4N813 | |||||
| WormQTL | gene | WBGene00009891 | |||||||
| WormFlux | gene | WBGene00009891 | |||||||
| NDB | locus_tag | CELE_F49E11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009891|UniProtKB=Q20609 | |||||||
| family | PTHR10334 | ||||||||
| NCBI | gene | 186049 | |||||||
| RefSeq | protein | NM_070097.2 | |||||||
| TREEFAM | TREEFAM_ID | TF352352 | |||||||
| TrEMBL | UniProtAcc | Q20609 | |||||||
| UniProt_GCRP | UniProtAcc | Q20609 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | scl-10 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scl | ||||||||
| Allele | WBVar02151056 | ||||||||
| WBVar01500079 | |||||||||
| WBVar00438982 | |||||||||
| WBVar00438983 | |||||||||
| WBVar00438984 | |||||||||
| WBVar00951967 | |||||||||
| WBVar00951968 | |||||||||
| WBVar00951969 | |||||||||
| WBVar00951970 | |||||||||
| WBVar00951971 | |||||||||
| WBVar00951972 | |||||||||
| WBVar00951973 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01497346 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01804459 | |||||||||
| WBVar00193051 | |||||||||
| WBVar00193052 | |||||||||
| WBVar00244935 | |||||||||
| WBVar02123823 | |||||||||
| WBVar02042144 | |||||||||
| WBVar02123514 | |||||||||
| WBVar01499492 | |||||||||
| WBVar01499493 | |||||||||
| WBVar02037403 | |||||||||
| WBVar02122614 | |||||||||
| WBVar02037404 | |||||||||
| WBVar01500245 | |||||||||
| WBVar02037405 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068519 | ||||||||
| Ortholog (57) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | scl-10 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 26 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be located in extracellular space. Is an ortholog of several human genes including CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1); GLIPR1 (GLI pathogenesis related 1); and PI15 (peptidase inhibitor 15). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49E11.5 | |||||||
| Corresponding_transcript | F49E11.5.1 | ||||||||
| Other_sequence | Tcol_isotig23698 | ||||||||
| Tcol_isotig24109 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032534 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047844 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015311 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019789 | ||||||||
| Expr1151677 | |||||||||
| Expr2015625 | |||||||||
| Drives_construct | WBCnstr00031839 | ||||||||
| Construct_product | WBCnstr00031839 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (66) | |||||||||
| Interaction | WBInteraction000122977 | ||||||||
| WBInteraction000123211 | |||||||||
| WBInteraction000331089 | |||||||||
| WBInteraction000331090 | |||||||||
| WBInteraction000360393 | |||||||||
| WBInteraction000360793 | |||||||||
| WBInteraction000428854 | |||||||||
| WBInteraction000433165 | |||||||||
| Map_info | Map | IV | Position | 7.41296 | Error | 0.04953 | |||
| Positive | Positive_clone | F49E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062663 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
