WormBase Tree Display for Gene: WBGene00008195

WBGene00008195 SMap: S_parent: Sequence: C49C3
  Identity: Version: 2
    Name: CGC_name: ceh-88 Person_evidence: WBPerson83
      Sequence_name: C49C3.5
      Molecular_name (4)
      Other_name: CELE_C49C3.5 Accession_evidence: NDB BX284604
      Public_name: ceh-88
    DB_info: Database: AceView gene 4S273
        WormQTL gene WBGene00008195
        WormFlux gene WBGene00008195
        NDB locus_tag CELE_C49C3.5
        Panther gene CAEEL|WormBase=WBGene00008195|UniProtKB=Q9XUG3
          family PTHR10390
        NCBI gene 178514
        RefSeq protein NM_070680.3
        TREEFAM TREEFAM_ID TF318427
        TrEMBL UniProtAcc Q9XUG3
        UniProt_GCRP UniProtAcc Q9XUG3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 30 Sep 2011 16:40:16 WBPerson2970 Name_change: CGC_name: ceh-88
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ceh
    Allele: WBVar01848263
      WBVar01848264
      WBVar01499527
      WBVar00308178
      WBVar02124494
      WBVar01498996
      WBVar02038733
      WBVar02038734
      WBVar01498262
      WBVar02098182
      WBVar02098183
      WBVar02098184
      WBVar02098185
      WBVar02098186
      WBVar02098187
      WBVar01499925
      WBVar02098188
      WBVar02098189
      WBVar01671640
      WBVar01671641
      WBVar01807410
      WBVar01671642
      WBVar01671643
      WBVar01807411
      WBVar01671644
      WBVar01807412
      WBVar01671645
      WBVar01807413
      WBVar01671646
      WBVar01671647
      WBVar01671648
      WBVar01671649
      WBVar01671650
      WBVar01671651
      WBVar01671652
      WBVar01671653
      WBVar01671654
      WBVar01671655
      WBVar01671656
      WBVar00975400
      WBVar01671657
      WBVar00975401
      WBVar01671658
      WBVar00975402
      WBVar00975403
      WBVar01671659
      WBVar01671660
      WBVar00975404
      WBVar00975405
      WBVar01457140
      WBVar01671661
      WBVar00975406
      WBVar01457141
      WBVar01671662
      WBVar01457142
      WBVar01671663
      WBVar00975407
      WBVar01457143
      WBVar01671664
      WBVar00975408
      WBVar01457144
      WBVar01671665
      WBVar00975409
      WBVar01457145
      WBVar01671666
      WBVar00975410
      WBVar00975411
      WBVar01671667
      WBVar00446402
      WBVar01671668
      WBVar00975412
      WBVar01671669
      WBVar00975413
      WBVar00446403
      WBVar00975414
      WBVar01671670
      WBVar00446404
      WBVar01498676
      WBVar01671671
      WBVar00975415
      WBVar00446405
      WBVar01671672
      WBVar00975416
      WBVar01671673
      WBVar00975417
      WBVar01671674
      WBVar00975418
      WBVar00975419
      WBVar01671675
      WBVar01799888
      WBVar01799889
      WBVar01671676
      WBVar00975420
      WBVar01799890
      WBVar01671677
      WBVar01671678
      WBVar01799891
      WBVar01799892
      WBVar01671679
      WBVar02117744
      WBVar01799893
      WBVar01671680
      WBVar01799894
      WBVar01671681
      WBVar01498687
      WBVar02117745
      WBVar02123266
      WBVar01799895
      WBVar01671682
      WBVar01671683
      WBVar01671684
      WBVar01671685
      WBVar01671686
      WBVar01671687
      WBVar01671688
      WBVar00200334
      WBVar01671689
      WBVar01671690
      WBVar01671691
      WBVar01671692
      WBVar01671693
      WBVar02004223
      WBVar01671694
      WBVar02004224
      WBVar01671695
      WBVar01671696
      WBVar01671697
      WBVar01671698
      WBVar01671699
      WBVar01660999
      WBVar01671700
      WBVar01671701
      WBVar01671702
      WBVar01671703
      WBVar01498341
      WBVar01671704
      WBVar01671705
      WBVar01671706
      WBVar02123843
      WBVar01671707
      WBVar01671708
      WBVar01671709
      WBVar01671710
      WBVar02122008
      WBVar01671711
      WBVar02123118
      WBVar01833565
      WBVar01833566
      WBVar02110451
      WBVar02110452
      WBVar02109354
      WBVar02109355
      WBVar02109356
      WBVar02109357
      WBVar01500245
      WBVar00249325
    Strain: WBStrain00003391
      WBStrain00049286
      WBStrain00049291
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (22)
    Paralog: WBGene00000453 Caenorhabditis elegans From_analysis: Panther
      WBGene00000454 Caenorhabditis elegans From_analysis: Panther
      WBGene00000455 Caenorhabditis elegans From_analysis: Panther
      WBGene00006775 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: ceh-88 is a divergent homeobox gene; it encodes two homeodomains; most homeodomain proteins bind DNA and function as transcription factors; ceh-88 is expressed in the pharynx, anal depressor muscle, hypodermis, nervous system, reproductive system, coelomocyte, intestine, excretory cell, and the body wall musculature. Paper_evidence: WBPaper00046864
            WBPaper00006525
            WBPaper00026980
            WBPaper00029055
            WBPaper00045521
            WBPaper00045974
            WBPaper00046338
            WBPaper00048988
          Person_evidence: WBPerson83
          Curator_confirmed: WBPerson324
          Date_last_updated: 19 Apr 2017 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in several structures, including excretory cell; hyp12; neurons; tail hypodermis; and ventral nerve cord. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C49C3.5
    Corresponding_CDS_history: C49C3.5:wp160
    Corresponding_transcript: C49C3.5.1
      C49C3.5.2
    Other_sequence: CBC09370_1
    Associated_feature: WBsf646609
      WBsf646610
      WBsf978603
      WBsf229628
    Transcription_factor: WBTranscriptionFactor000601
  Experimental_info: RNAi_result: WBRNAi00090648 Inferred_automatically: RNAi_primary
      WBRNAi00029969 Inferred_automatically: RNAi_primary
      WBRNAi00012127 Inferred_automatically: RNAi_primary
      WBRNAi00012126 Inferred_automatically: RNAi_primary
      WBRNAi00042783 Inferred_automatically: RNAi_primary
      WBRNAi00061617 Inferred_automatically: RNAi_primary
      WBRNAi00042784 Inferred_automatically: RNAi_primary
      WBRNAi00029968 Inferred_automatically: RNAi_primary
      WBRNAi00076225 Inferred_automatically: RNAi_primary
    Expr_pattern (13)
    Drives_construct: WBCnstr00003860
      WBCnstr00012625
      WBCnstr00033167
      WBCnstr00042446
      WBCnstr00042451
    Construct_product: WBCnstr00022532
      WBCnstr00033167
    Microarray_results (38)
    Expression_cluster (119)
    Interaction: WBInteraction000259579
      WBInteraction000268125
      WBInteraction000276166
      WBInteraction000285572
      WBInteraction000371044
      WBInteraction000411806
      WBInteraction000430008
      WBInteraction000505235
      WBInteraction000527914
      WBInteraction000529979
  Map_info: Map: IV Position: 16.4899 Error: 0.005816
    Positive: Positive_clone: C49C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00060123
    WBPaper00061738
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene