WormBase Tree Display for Gene: WBGene00003038
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| WBGene00003038 | SMap | S_parent | Sequence | ZK673 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lin-56 | Paper_evidence | WBPaper00037906 | |||||
| Person_evidence | WBPerson261 | ||||||||
| Sequence_name | ZK673.3 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | CELE_ZK673.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | lin-56 | ||||||||
| DB_info | Database | AceView | gene | 2K741 | |||||
| WormFlux | gene | WBGene00003038 | |||||||
| NDB | locus_tag | CELE_ZK673.3 | |||||||
| NCBI | gene | 174609 | |||||||
| RefSeq | protein | NM_063845.5 | |||||||
| SwissProt | UniProtAcc | Q09377 | |||||||
| TREEFAM | TREEFAM_ID | TF343895 | |||||||
| UniProt_GCRP | UniProtAcc | Q09377 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 18 Jan 2011 10:26:31 | WBPerson2970 | Event | Acquires_merge | WBGene00014059 | ||||
| Name_change | Sequence_name | ZK673.3 | |||||||
| Acquires_merge | WBGene00014059 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| Allele | WBVar00090563 | Inferred_automatically | From strain object: MT12835 | ||||||
| From strain object: MT12881 | |||||||||
| From strain object: MT8842 | |||||||||
| WBVar00317238 | |||||||||
| WBVar01499702 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00762686 | |||||||||
| WBVar00762687 | |||||||||
| WBVar00762688 | |||||||||
| WBVar00762689 | |||||||||
| WBVar00762690 | |||||||||
| WBVar00762691 | |||||||||
| WBVar00175095 | |||||||||
| WBVar00762692 | |||||||||
| WBVar00175096 | |||||||||
| WBVar00762693 | |||||||||
| WBVar00762694 | |||||||||
| WBVar00762695 | |||||||||
| WBVar00762696 | |||||||||
| WBVar00762697 | |||||||||
| WBVar00762698 | |||||||||
| WBVar00762699 | |||||||||
| WBVar00762700 | |||||||||
| WBVar00228376 | |||||||||
| WBVar01604696 | |||||||||
| WBVar01604697 | |||||||||
| WBVar01604698 | |||||||||
| WBVar01546767 | |||||||||
| WBVar01546768 | |||||||||
| WBVar00376166 | |||||||||
| WBVar00376167 | |||||||||
| WBVar00376168 | |||||||||
| WBVar00376169 | |||||||||
| WBVar00376170 | |||||||||
| WBVar01489361 | |||||||||
| WBVar01935419 | |||||||||
| WBVar01498940 | |||||||||
| WBVar02151778 | |||||||||
| Strain | WBStrain00027347 | ||||||||
| WBStrain00027402 | |||||||||
| WBStrain00027406 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00053610 | ||||||||
| 00053611 | |||||||||
| 00053612 | |||||||||
| 00053613 | |||||||||
| 00053614 | |||||||||
| 00053615 | |||||||||
| 00053616 | |||||||||
| 00053617 | |||||||||
| 00053618 | |||||||||
| Contained_in_operon | CEOP2488 | ||||||||
| Ortholog | WBGene00053373 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
| WBGene00158352 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| CSP29.g17361 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP32.g5686 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP39.g11553 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP39.g6649 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g16071 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00141.g5463 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g5730 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00014060 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | lin-56 encodes a novel protein that contains a THAP zinc-finger-like domain; lin-56, along with lin-15A, which also encodes a THAP domain-containing protein, functions as a transcriptional regulator to negatively regulate expression of LIN-3/EGF and, in turn, Ras-mediated vulval development; LIN-56 is expressed ubiquitously in somatic cells from embryogenesis through adulthood and localizes to nuclei; LIN-56 and LIN-15A physically interact in a yeast two-hybrid assay and are mutually required for normal patterns of expression. | Paper_evidence | WBPaper00005861 | |||||
| WBPaper00026688 | |||||||||
| WBPaper00037906 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 21 Mar 2011 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including protein localization to nucleus; protein stabilization; and vulval development. Located in nucleus. Expressed in somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK673.3 | |||||||
| Corresponding_transcript | ZK673.3.1 | ||||||||
| Other_sequence | CBC01728_1 | ||||||||
| Associated_feature | WBsf644610 | ||||||||
| WBsf222016 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00059644 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000884 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038411 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062497 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9238 | ||||||||
| Expr1031424 | |||||||||
| Expr1163054 | |||||||||
| Expr2013194 | |||||||||
| Expr2031426 | |||||||||
| Drives_construct | WBCnstr00036268 | ||||||||
| Construct_product | WBCnstr00036268 | ||||||||
| Antibody | WBAntibody00001245 | ||||||||
| WBAntibody00002218 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | II | Position | 2.57334 | Error | 0.00813 | |||
| Positive | Positive_clone | ZK673 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4103 | |||||||
| 4123 | |||||||||
| 4124 | |||||||||
| Reference (20) | |||||||||
| Method | Gene |
