WormBase Tree Display for Gene: WBGene00001716
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WBGene00001716 | Evidence | Paper_evidence | WBPaper00003717 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T02E9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | grl-7 | Person_evidence | WBPerson83 | |||||
Sequence_name | T02E9.2 | ||||||||
Molecular_name | T02E9.2a | ||||||||
T02E9.2a.1 | |||||||||
CE13064 | |||||||||
T02E9.2b | |||||||||
CE38539 | |||||||||
T02E9.2b.1 | |||||||||
Other_name | CELE_T02E9.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | grl-7 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00001716 | |||||
WormFlux | gene | WBGene00001716 | |||||||
NDB | locus_tag | CELE_T02E9.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001716|UniProtKB=O18015 | |||||||
family | PTHR23261 | ||||||||
NCBI | gene | 179569 | |||||||
RefSeq | protein | NM_001028923.7 | |||||||
NM_001028922.4 | |||||||||
TREEFAM | TREEFAM_ID | TF316573 | |||||||
TrEMBL | UniProtAcc | Q52GX6 | |||||||
O18015 | |||||||||
UniProt_GCRP | UniProtAcc | O18015 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grl | ||||||||
Allele | WBVar01496029 | ||||||||
WBVar01461758 | |||||||||
WBVar02024353 | |||||||||
WBVar02061029 | |||||||||
WBVar01490194 | |||||||||
WBVar00470504 | |||||||||
WBVar00470505 | |||||||||
WBVar00470506 | |||||||||
WBVar01743487 | |||||||||
WBVar01274904 | |||||||||
WBVar01484699 | |||||||||
WBVar00093755 | |||||||||
WBVar01048199 | |||||||||
WBVar01048200 | |||||||||
WBVar01500208 | |||||||||
WBVar01048201 | |||||||||
WBVar01048202 | |||||||||
WBVar01500209 | |||||||||
WBVar01048203 | |||||||||
WBVar01048204 | |||||||||
WBVar01048205 | |||||||||
WBVar01048206 | |||||||||
WBVar01865735 | |||||||||
WBVar01048207 | |||||||||
WBVar01048208 | |||||||||
WBVar01865736 | |||||||||
WBVar01865737 | |||||||||
WBVar01499299 | |||||||||
WBVar00004225 | |||||||||
WBVar01499316 | |||||||||
WBVar02150471 | |||||||||
Strain | WBStrain00032683 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00031255 | ||||||||
Ortholog (29) | |||||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | grl-7 encodes a hedgehog-like protein, with an N-terminal signalsequence, a central low-complexity region, and a C-terminal Ground-like(Grl) domain; GRL-7 is expressed in intestine, hypodermis, and seamcells; the Grl domain is predicted to form a cysteine-crosslinkedprotein involved in intercellular signalling, and it has subtlesimilarity to the N-terminal Hedge domain of HEDGEHOG proteins. | Paper_evidence | WBPaper00003717 | |||||
WBPaper00006525 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||||
Automated_description | Located in apical plasma membrane. Expressed in hypodermal cell and ventral cord blast cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T02E9.2a | |||||||
T02E9.2b | |||||||||
Corresponding_transcript | T02E9.2a.1 | ||||||||
T02E9.2b.1 | |||||||||
Other_sequence | CRC02593_1 | ||||||||
CR11413 | |||||||||
PPC06936_1 | |||||||||
OOC00271_1 | |||||||||
CR01442 | |||||||||
Associated_feature | WBsf669378 | ||||||||
WBsf669379 | |||||||||
WBsf1001327 | |||||||||
WBsf1001328 | |||||||||
WBsf234526 | |||||||||
Experimental_info | RNAi_result | WBRNAi00018027 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035063 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052216 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (9) | |||||||||
Drives_construct | WBCnstr00003902 | ||||||||
WBCnstr00012011 | |||||||||
WBCnstr00036744 | |||||||||
WBCnstr00042492 | |||||||||
Construct_product | WBCnstr00036744 | ||||||||
WBCnstr00042492 | |||||||||
Microarray_results (25) | |||||||||
Expression_cluster (306) | |||||||||
Interaction (202) | |||||||||
Map_info | Map | V | Position | 3.07557 | Error | 0.000511 | |||
Positive | Positive_clone | T02E9 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003717 | ||||||||
WBPaper00028754 | |||||||||
WBPaper00031588 | |||||||||
WBPaper00047478 | |||||||||
WBPaper00057376 | |||||||||
WBPaper00058700 | |||||||||
WBPaper00061320 | |||||||||
WBPaper00064105 | |||||||||
Remark | ground-like gene, contains ground-like domain, hedgehog-related | Paper_evidence | WBPaper00003717 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |