WormBase Tree Display for Gene: WBGene00001704
expand all nodes | collapse all nodes | view schema
WBGene00001704 | Evidence | Person_evidence | WBPerson83 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y87G2A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | grd-15 | Person_evidence | WBPerson83 | |||||
Sequence_name | Y87G2A.15 | ||||||||
Molecular_name | Y87G2A.15 | ||||||||
Y87G2A.15.1 | |||||||||
CE34232 | |||||||||
Other_name | CELE_Y87G2A.15 | Accession_evidence | NDB | BX284601 | |||||
Public_name | grd-15 | ||||||||
DB_info | Database | AceView | gene | 1O157 | |||||
WormQTL | gene | WBGene00001704 | |||||||
WormFlux | gene | WBGene00001704 | |||||||
NDB | locus_tag | CELE_Y87G2A.15 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001704|UniProtKB=Q7YXB4 | |||||||
family | PTHR31967 | ||||||||
NCBI | gene | 3565288 | |||||||
RefSeq | protein | NM_001026660.6 | |||||||
TREEFAM | TREEFAM_ID | TF316390 | |||||||
TrEMBL | UniProtAcc | Q7YXB4 | |||||||
UniProt_GCRP | UniProtAcc | Q7YXB4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grd | ||||||||
Allele | WBVar01665128 | ||||||||
WBVar02128912 | |||||||||
WBVar02128913 | |||||||||
WBVar01232618 | |||||||||
WBVar01557215 | |||||||||
WBVar02113273 | |||||||||
WBVar01557216 | |||||||||
WBVar01499739 | |||||||||
WBVar01948276 | |||||||||
WBVar01948277 | |||||||||
WBVar02002430 | |||||||||
WBVar00686066 | |||||||||
WBVar00686067 | |||||||||
WBVar00686068 | |||||||||
WBVar00686069 | |||||||||
WBVar00686070 | |||||||||
WBVar00686071 | |||||||||
WBVar00686072 | |||||||||
WBVar00686073 | |||||||||
WBVar00686074 | |||||||||
WBVar00686075 | |||||||||
WBVar00686076 | |||||||||
WBVar00686077 | |||||||||
WBVar00686078 | |||||||||
WBVar00686079 | |||||||||
WBVar00686080 | |||||||||
WBVar00686081 | |||||||||
WBVar00686082 | |||||||||
WBVar01914996 | |||||||||
WBVar01499999 | |||||||||
WBVar01352756 | |||||||||
WBVar00542214 | |||||||||
WBVar00350582 | |||||||||
WBVar00350583 | |||||||||
WBVar00265661 | |||||||||
WBVar00350584 | |||||||||
WBVar00350585 | |||||||||
WBVar00350586 | |||||||||
WBVar00160990 | |||||||||
WBVar00160991 | |||||||||
WBVar01501886 | |||||||||
WBVar01501887 | |||||||||
WBVar01501888 | |||||||||
WBVar01501889 | |||||||||
WBVar01501890 | |||||||||
Strain | WBStrain00006138 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (22) | |||||||||
Paralog (26) | |||||||||
Structured_description | Concise_description | grd-15 encodes a hedgehog-like protein, with an N-terminal signalsequence and a C-terminal Ground domain; GRD-15 is expressed in amphidsocket cells; the Ground domain is predicted to form acysteine-crosslinked protein involved in intercellular signalling, andit has subtle similarity to the N-terminal Hedge domain of HEDGEHOGproteins; grd-15 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00003717 | |||||
WBPaper00006525 | |||||||||
WBPaper00026841 | |||||||||
WBPaper00027263 | |||||||||
Date_last_updated | 18 Jan 2007 00:00:00 | ||||||||
Automated_description | Enriched in arc ant V based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including mianserin; Zidovudine; and Psoralens based on RNA-seq studies. Is predicted to encode a protein with the following domain: Ground-like domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y87G2A.15 | |||||||
Corresponding_transcript | Y87G2A.15.1 | ||||||||
Other_sequence | PT03980 | ||||||||
ES412002.1 | |||||||||
MI05722 | |||||||||
PTC03705_1 | |||||||||
SR00583 | |||||||||
HBC21834_1 | |||||||||
Associated_feature | WBsf643806 | ||||||||
Experimental_info | RNAi_result | WBRNAi00004845 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076851 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077004 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1042 | ||||||||
Expr7134 | |||||||||
Expr1013066 | |||||||||
Expr1031018 | |||||||||
Expr1162020 | |||||||||
Expr2012229 | |||||||||
Expr2030465 | |||||||||
Drives_construct | WBCnstr00001930 | ||||||||
WBCnstr00004511 | |||||||||
Microarray_results (15) | |||||||||
Expression_cluster (80) | |||||||||
WBProcess | WBbiopr:00000123 | ||||||||
Map_info | Map | I | Position | 21.4682 | Error | 0.006807 | |||
Positive | Positive_clone | Y87G2A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026841 | ||||||||
WBPaper00028754 | |||||||||
WBPaper00031588 | |||||||||
WBPaper00064105 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |