WormBase Tree Display for Gene: WBGene00000535
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WBGene00000535 | SMap | S_parent | Sequence | K08B4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | cpi-1 | Paper_evidence | WBPaper00026724 | |||
WBPaper00005846 | |||||||
WBPaper00024997 | |||||||
Person_evidence | WBPerson4368 | ||||||
WBPerson390 | |||||||
Sequence_name | K08B4.6 | ||||||
Molecular_name | K08B4.6 | ||||||
K08B4.6.1 | |||||||
CE18035 | |||||||
Other_name | cli-2 | ||||||
CELE_K08B4.6 | Accession_evidence | NDB | BX284604 | ||||
Public_name | cpi-1 | ||||||
DB_info | Database | AceView | gene | 4G858 | |||
WormQTL | gene | WBGene00000535 | |||||
WormFlux | gene | WBGene00000535 | |||||
NDB | locus_tag | CELE_K08B4.6 | |||||
Panther | gene | CAEEL|WormBase=WBGene00000535|UniProtKB=G5EDZ9 | |||||
family | PTHR46186 | ||||||
NCBI | gene | 177372 | |||||
RefSeq | protein | NM_068514.6 | |||||
SwissProt | UniProtAcc | G5EDZ9 | |||||
UniProt_GCRP | UniProtAcc | G5EDZ9 | |||||
OMIM | gene | 601891 | |||||
604312 | |||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cpi | ||||||
Allele | WBVar00092467 | Inferred_automatically | From strain object: RB1171 | ||||
WBVar01900886 | |||||||
WBVar01499365 | |||||||
WBVar02053808 | |||||||
WBVar00426327 | |||||||
WBVar00426328 | |||||||
WBVar00426329 | |||||||
WBVar01499395 | |||||||
WBVar01499396 | |||||||
WBVar00914081 | |||||||
WBVar00914082 | |||||||
WBVar00914083 | |||||||
WBVar00914084 | |||||||
WBVar00914085 | |||||||
WBVar01481934 | |||||||
WBVar01481935 | |||||||
WBVar01481936 | |||||||
WBVar01499633 | |||||||
WBVar01516091 | |||||||
WBVar01500245 | |||||||
Strain | WBStrain00031872 | ||||||
WBStrain00054919 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00015098 | ||||||
00015099 | |||||||
00015100 | |||||||
00015101 | |||||||
00015102 | |||||||
00015103 | |||||||
00015104 | |||||||
00015105 | |||||||
00015106 | |||||||
00107561 | |||||||
Ortholog (73) | |||||||
Paralog | WBGene00000534 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00016523 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00023486 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | cpi-1 encodes a homolog of cysteine protease inhibitors (cystatins); cpi-1 is at least superficially dispensable for viability and gross morphology. | Paper_evidence | WBPaper00005654 | |||
WBPaper00012890 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 16 Jul 2007 00:00:00 | ||||||
Automated_description | Enables cysteine-type endopeptidase inhibitor activity. Predicted to be located in cytoplasm; extracellular space; and vesicle. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; CST3-related cerebral amyloid angiopathy; artery disease (multiple); and autoimmune disease of the nervous system (multiple). Is an ortholog of human CST1 (cystatin SN); CST3 (cystatin C); and CST4 (cystatin S). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model (17) | ||||||
Molecular_info | Corresponding_CDS | K08B4.6 | |||||
Corresponding_transcript | K08B4.6.1 | ||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf651835 | ||||||
WBsf230135 | |||||||
Experimental_info | RNAi_result | WBRNAi00089361 | Inferred_automatically | RNAi_primary | |||
WBRNAi00034106 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089116 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089348 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050231 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016775 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1027924 | ||||||
Expr1153925 | |||||||
Expr2010489 | |||||||
Expr2028729 | |||||||
Drives_construct | WBCnstr00037466 | ||||||
Construct_product | WBCnstr00037466 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (307) | |||||||
Interaction (190) | |||||||
Map_info | Map | IV | Position | 2.96435 | Error | 0.003526 | |
Positive | Positive_clone | K08B4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4900 | |||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Sequence connection from [Hashmi S, Lustigan S], [krb 020711] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
cpi-1 is also an other_name of cpin-1 (WBGene000000775) | Person_evidence | WBPerson531 | |||||
Method | Gene |