WormBase Tree Display for Gene: WBGene00000224

WBGene00000224 Evidence: Author_evidence: Veljkovic E
      Verrey F
    From_analysis
  SMap: S_parent: Sequence: F26D10
  Identity: Version: 2
    Name: CGC_name: atgp-1
      Sequence_name: F26D10.9
      Molecular_name: F26D10.9a
        F26D10.9a.1
        CE32183
        F26D10.9b
        CE41226
        F26D10.9b.1
      Other_name: atg-1
        tag-95 CGC_data_submission
        CELE_F26D10.9 Accession_evidence: NDB BX284604
      Public_name: atgp-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: atgp
    Allele: WBVar01807369
      WBVar01499527
      WBVar01807370
      WBVar01807371
      WBVar01807372
      WBVar01807373
      WBVar00974981
      WBVar00974982
      WBVar00974983
      WBVar00974984
      WBVar00974985
      WBVar00974986
      WBVar01670325
      WBVar01670326
      WBVar00974987
      WBVar01670327
      WBVar00218936
      WBVar00974988
      WBVar01670328
      WBVar00974989
      WBVar00974990
      WBVar01670329
      WBVar00974991
      WBVar01670330
      WBVar00974992
      WBVar01670331
      WBVar01670332
      WBVar00974993
      WBVar02124494
      WBVar01670333
      WBVar00974994
      WBVar01670334
      WBVar00974995
      WBVar01498996
      WBVar01670335
      WBVar00974996
      WBVar00974997
      WBVar01670336
      WBVar01498262
      WBVar01670337
      WBVar00974998
      WBVar00974999
      WBVar01670338
      WBVar01670339
      WBVar01670340
      WBVar02043185
      WBVar01670341
      WBVar02043186
      WBVar01670342
      WBVar01670343
      WBVar01499925
      WBVar01670344
      WBVar01457111
      WBVar01670345
      WBVar01457112
      WBVar01670346
      WBVar01670347
      WBVar01670348
      WBVar01670349
      WBVar01670350
      WBVar02004168
      WBVar02004169
      WBVar01670351
      WBVar02004170
      WBVar01670352
      WBVar01670353
      WBVar01670354
      WBVar01670355
      WBVar01670356
      WBVar01670357
      WBVar00200288
      WBVar01670358
      WBVar01670359
      WBVar01670360
      WBVar01670361
      WBVar01670362
      WBVar01670363
      WBVar01670364
      WBVar01670365
      WBVar01670366
      WBVar01499581
      WBVar01670367
      WBVar01670368
      WBVar01670369
      WBVar01670370
      WBVar01670371
      WBVar01670372
      WBVar01670373
      WBVar01670374
      WBVar01670375
      WBVar01670376
      WBVar01670377
      WBVar01670378
      WBVar01670379
      WBVar01660967
      WBVar02070122
      WBVar01670380
      WBVar01670381
      WBVar01670382
      WBVar01498676
      WBVar01670383
      WBVar01670384
      WBVar00091683
      WBVar01670385
      WBVar01670386
      WBVar01670387
      WBVar01670388
      WBVar01483225
      WBVar01905212
      WBVar01905213
      WBVar01670389
      WBVar01670390
      WBVar01670391
      WBVar01670392
      WBVar01670393
      WBVar01498687
      WBVar02123266
      WBVar01670394
      WBVar01670395
      WBVar01840799
      WBVar01670396
      WBVar01670397
      WBVar01670398
      WBVar01670399
      WBVar02098063
      WBVar02098064
      WBVar02098065
      WBVar02098066
      WBVar02098067
      WBVar02098068
      WBVar02098069
      WBVar02098070
      WBVar01498341
      WBVar02123843
      WBVar00249631
      WBVar02122008
      WBVar02123118
      WBVar00067189
      WBVar02000994
      WBVar02000995
      WBVar00446291
      WBVar00446292
      WBVar00446293
      WBVar00446294
      WBVar00446295
      WBVar00446296
      WBVar00446297
      WBVar00446298
      WBVar01848243
      WBVar01500245
      WBVar01908621
    Strain: WBStrain00035583
    RNASeq_FPKM (74)
    GO_annotation: 00102866
      00102867
      00107057
    Ortholog (61)
    Paralog: WBGene00000225 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008220 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011409 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: atgp-1 encodes a predicted amino acid transporter glycoprotein subunit; when co-expressed in Xenopus oocytes with the AAT-1 or AAT-3 catalytic subunit, ATGP-1 is not able to facilitate amino acid uptake, even though ATGP-1 is able to covalently associate with AAT-1 or AAT-3 in the Xenopus expression system; however, when co-expressed with AAT-9, ATGP-1 is able to enhance the activity of this catalytic subunit; when expressed alone or with AAT-3, ATGP-1 localizes to the cell surface; when co-expressed with AAT-1, ATGP-1 localizes intracellularly. Paper_evidence: WBPaper00006408
            WBPaper00024381
          Curator_confirmed: WBPerson1843
          Date_last_updated: 03 Mar 2006 00:00:00
      Automated_description: Predicted to enable hydrolase activity, acting on glycosyl bonds. Predicted to be involved in carbohydrate metabolic process. Located in plasma membrane. Human ortholog(s) of this gene implicated in cystinuria. Is an ortholog of human SLC3A1 (solute carrier family 3 member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:9266 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11025)
  Molecular_info: Corresponding_CDS: F26D10.9a
      F26D10.9b
    Corresponding_CDS_history: F26D10.9:wp88
    Corresponding_transcript: F26D10.9a.1
      F26D10.9b.1
    Other_sequence (93)
    Associated_feature: WBsf646605
      WBsf660980
      WBsf660981
      WBsf717214
      WBsf981871
      WBsf229622
  Experimental_info: RNAi_result: WBRNAi00031434 Inferred_automatically: RNAi_primary
      WBRNAi00013927 Inferred_automatically: RNAi_primary
      WBRNAi00045611 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027197
      Expr1030141
      Expr1149524
      Expr2009498
      Expr2027735
    Drives_construct: WBCnstr00037993
    Construct_product: WBCnstr00037993
    Antibody: WBAntibody00000719
    Microarray_results (21)
    Expression_cluster (181)
    Interaction (33)
  Map_info: Map: IV Position: 16.2882 Error: 0.004481
    Positive: Positive_clone: F26D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4164
    Pseudo_map_position
  Reference: WBPaper00006408
    WBPaper00038491
    WBPaper00039044
    WBPaper00039099
    WBPaper00039519
    WBPaper00055090
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene