WormBase Tree Display for Gene: WBGene00000558
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| WBGene00000558 | Evidence | Person_evidence | WBPerson168 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R09B5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | cnc-4 | Person_evidence | WBPerson168 | |||||
| Sequence_name | R09B5.9 | ||||||||
| Molecular_name | R09B5.9 | ||||||||
| R09B5.9.1 | |||||||||
| CE12634 | |||||||||
| Other_name | CELE_R09B5.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cnc-4 | ||||||||
| DB_info | Database | AceView | gene | 5B925 | |||||
| WormQTL | gene | WBGene00000558 | |||||||
| WormFlux | gene | WBGene00000558 | |||||||
| NDB | locus_tag | CELE_R09B5.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000558|UniProtKB=O44613 | |||||||
| family | PTHR22552 | ||||||||
| NCBI | gene | 178635 | |||||||
| RefSeq | protein | NM_071015.7 | |||||||
| TrEMBL | UniProtAcc | O44613 | |||||||
| UniProt_GCRP | UniProtAcc | O44613 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cnc | ||||||||
| Allele | WBVar01500253 | ||||||||
| WBVar00986575 | |||||||||
| WBVar01818974 | |||||||||
| WBVar00986576 | |||||||||
| WBVar01499528 | |||||||||
| WBVar00986577 | |||||||||
| WBVar00986578 | |||||||||
| WBVar00986579 | |||||||||
| WBVar00986580 | |||||||||
| WBVar00986581 | |||||||||
| WBVar00986582 | |||||||||
| WBVar00986583 | |||||||||
| WBVar01499167 | |||||||||
| WBVar01499740 | |||||||||
| WBVar01971024 | |||||||||
| WBVar00450076 | |||||||||
| WBVar01499784 | |||||||||
| WBVar01499969 | |||||||||
| WBVar01499496 | |||||||||
| WBVar01500066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032947 | ||||||||
| 00032948 | |||||||||
| 00032949 | |||||||||
| Ortholog (6) | |||||||||
| Structured_description | Concise_description | cnc-4 encodes one of eleven C. elegans caenacin peptides; cnc-4 expression is strongly induced after infection by the fungus Drechmeria coniospora, suggesting that it functions as a secreted antimicrobial peptide in the innate immune response. | Paper_evidence | WBPaper00006488 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Jan 2010 00:00:00 | ||||||||
| Automated_description | Involved in defense response to fungus and innate immune response. Predicted to be located in membrane. Expressed in hypodermis; intestine; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R09B5.9 | |||||||
| Corresponding_transcript | R09B5.9.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf646663 | ||||||||
| WBsf231407 | |||||||||
| WBsf231408 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051603 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034775 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017635 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8216 | ||||||||
| Expr10690 | |||||||||
| Expr1025430 | |||||||||
| Expr1030337 | |||||||||
| Expr1155277 | |||||||||
| Expr2010265 | |||||||||
| Expr2028507 | |||||||||
| Drives_construct | WBCnstr00017463 | ||||||||
| WBCnstr00037453 | |||||||||
| Construct_product | WBCnstr00037453 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (327) | |||||||||
| Interaction | WBInteraction000364416 | ||||||||
| WBInteraction000503904 | |||||||||
| WBInteraction000504872 | |||||||||
| WBInteraction000504873 | |||||||||
| WBInteraction000504951 | |||||||||
| WBInteraction000543093 | |||||||||
| WBInteraction000543094 | |||||||||
| WBInteraction000543095 | |||||||||
| Map_info | Map | V | Position | -18.9242 | Error | 0.001753 | |||
| Positive | Positive_clone | R09B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006437 | ||||||||
| WBPaper00006488 | |||||||||
| WBPaper00025180 | |||||||||
| WBPaper00032031 | |||||||||
| WBPaper00032891 | |||||||||
| WBPaper00035429 | |||||||||
| WBPaper00037416 | |||||||||
| WBPaper00037531 | |||||||||
| WBPaper00039851 | |||||||||
| WBPaper00053596 | |||||||||
| WBPaper00058870 | |||||||||
| WBPaper00059576 | |||||||||
| WBPaper00060703 | |||||||||
| WBPaper00061421 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00061568 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
