WormBase Tree Display for Gene: WBGene00003772

WBGene00003772 Evidence: Author_evidence: Haklai-Toper L
  SMap: S_parent: Sequence: F20B10
  Identity: Version: 1
    Name: CGC_name: nlr-1
      Sequence_name: F20B10.1
      Molecular_name: F20B10.1
        F20B10.1.1
        CE40647
      Other_name: CELE_F20B10.1 Accession_evidence: NDB BX284604
      Public_name: nlr-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nlr
    Allele: WBVar00250996
      WBVar01499892
      WBVar01500079
      WBVar01731280
      WBVar01498811
      WBVar01498996
      WBVar01702987
      WBVar01482437
      WBVar01498636
      WBVar01499925
      WBVar01967137
      WBVar00437362
      WBVar01967138
      WBVar00437363
      WBVar00437364
      WBVar01967139
      WBVar00437365
      WBVar00947214
      WBVar00947215
      WBVar00437366
      WBVar00947216
      WBVar01795630
      WBVar00437367
      WBVar01795631
      WBVar00947217
      WBVar00437368
      WBVar00437369
      WBVar01795632
      WBVar00947218
      WBVar01795633
      WBVar00437370
      WBVar00947219
      WBVar00947220
      WBVar00947221
      WBVar00947222
      WBVar00947223
      WBVar00947224
      WBVar02121218
      WBVar00947225
      WBVar00947226
      WBVar00947227
      WBVar00947228
      WBVar00947229
      WBVar00947230
      WBVar00947231
      WBVar00947232
      WBVar02122146
      WBVar00947233
      WBVar00947234
      WBVar00947235
      WBVar00947236
      WBVar00947237
      WBVar01498307
      WBVar00947238
      WBVar00947239
      WBVar00947240
      WBVar01498310
      WBVar01498869
      WBVar02120508
      WBVar02124014
      WBVar02121623
      WBVar02123095
      WBVar02120706
      WBVar00192352
      WBVar00192353
      WBVar02124210
      WBVar02046054
      WBVar02124966
      WBVar01498735
      WBVar02123512
      WBVar01498569
      WBVar01498754
      WBVar02037203
      WBVar02037204
      WBVar01498576
      WBVar01498581
      WBVar01859134
      WBVar01859135
      WBVar02134792
      WBVar01500245
      WBVar01498775
      WBVar01498777
      WBVar01498779
    Strain: WBStrain00036730
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog (47)
    Paralog (49)
    Structured_description: Automated_description: Enables actin filament binding activity and gap junction channel activity. Involved in positive regulation of gap junction assembly and positive regulation of pharyngeal pumping. Located in gap junction. Expressed in RIS; pharyngeal gland cell; and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in several diseases, including Pitt-Hopkins syndrome; autistic disorder; and communication disorder (multiple). Is an ortholog of human CNTNAP5 (contactin associated protein family member 5). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (15)
  Molecular_info: Corresponding_CDS: F20B10.1
    Corresponding_CDS_history: F20B10.1:wp169
    Corresponding_transcript: F20B10.1.1
    Other_sequence: JI165112.1
      Acan_isotig04777
      EY458672.1
      Dviv_isotig19784
      JI247685.1
      Dviv_isotig19785
      MHC00101_1
      MH05847
      EY460391.1
      MC03680
      EY466247.1
      MCC03125_1
      MCC02391_1
      MC03146
      Acan_isotig04778
      EY470001.1
      MH02290
      ACC08911_1
      ACC26322_1
      MHC02522_1
    Associated_feature (18)
  Experimental_info: RNAi_result: WBRNAi00045068 Inferred_automatically: RNAi_primary
      WBRNAi00031154 Inferred_automatically: RNAi_primary
      WBRNAi00045067 Inferred_automatically: RNAi_primary
      WBRNAi00013592 Inferred_automatically: RNAi_primary
      WBRNAi00115343 Inferred_automatically: RNAi_primary
      WBRNAi00001494 Inferred_automatically: RNAi_primary
      WBRNAi00013593 Inferred_automatically: RNAi_primary
      WBRNAi00045069 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5798
      Expr9161
      Expr1024841
      Expr1031762
      Expr1149023
      Expr2014327
      Expr2032568
    Drives_construct: WBCnstr00004190
      WBCnstr00013758
      WBCnstr00035876
      WBCnstr00038180
    Construct_product: WBCnstr00035876
    Microarray_results (22)
    Expression_cluster (189)
    Interaction (15)
  Map_info: Map: IV Position: 5.76995 Error: 0.010598
    Positive: Positive_clone: F20B10 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5514
        5519
        4583
    Pseudo_map_position
  Reference: WBPaper00013424
    WBPaper00018360
    WBPaper00019572
    WBPaper00037763
    WBPaper00038491
    WBPaper00043312
    WBPaper00055090
    WBPaper00060680
    WBPaper00062491
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene